Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_C03
         (458 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39470-2|AAC71118.1|  862|Caenorhabditis elegans Temporarily ass...    27   6.6  
Z93373-2|CAN99669.1| 1671|Caenorhabditis elegans Hypothetical pr...    27   8.7  
Z93373-1|CAB07551.1| 1601|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>U39470-2|AAC71118.1|  862|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 127 protein.
          Length = 862

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +1

Query: 133 LDAEDYVNAFSIVMTCAGNRQELAKIIISFITQKLGREVISNL 261
           LD +  ++ FS+ M        L K ++   T +  RE+ISNL
Sbjct: 267 LDRQKLIDTFSVPMQRLTRYNLLLKAVLKVTTDENEREMISNL 309


>Z93373-2|CAN99669.1| 1671|Caenorhabditis elegans Hypothetical protein
            C01B9.1b protein.
          Length = 1671

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -1

Query: 380  CIYNYFTKIKIKHL*NV*CS*LVTLHFFKY 291
            C+  + TK+K++H  N     +  +HF  Y
Sbjct: 1201 CLSTFLTKVKLQHFMNFTTEFIFAIHFLAY 1230


>Z93373-1|CAB07551.1| 1601|Caenorhabditis elegans Hypothetical protein
            C01B9.1a protein.
          Length = 1601

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -1

Query: 380  CIYNYFTKIKIKHL*NV*CS*LVTLHFFKY 291
            C+  + TK+K++H  N     +  +HF  Y
Sbjct: 1131 CLSTFLTKVKLQHFMNFTTEFIFAIHFLAY 1160


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,310,984
Number of Sequences: 27780
Number of extensions: 147432
Number of successful extensions: 389
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 389
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 820565746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)