Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_C02
         (479 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   3.4  
SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1 |Schizosa...    25   4.5  
SPCC1884.02 |nic1|SPCC757.01|NiCoT heavy metal ion transporter N...    25   4.5  
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    25   5.9  
SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomy...    25   7.8  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    25   7.8  

>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = -2

Query: 427  LTNCVRITTNSLHLNFISYTI--LHKLFYIIALHLH*NKNHSLPKLLYN 287
            L +  + +TN  + N +SY     H+L +II    H  + H LP++  N
Sbjct: 2785 LVSIAQQSTNKSNTNSVSYLYRGYHELAWIINRFAHVARVHHLPEVCIN 2833


>SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -1

Query: 137 LLQSNIINKNVRNYLNEC*RDI*TMDIRT 51
           LLQ+ I + NV+     C +DI  MD+RT
Sbjct: 306 LLQTIIDDGNVKVVQTSCVQDIGVMDVRT 334


>SPCC1884.02 |nic1|SPCC757.01|NiCoT heavy metal ion transporter
           Nic1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 405

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 277 IITI*LLAGVYYWTVVLFPTIFSV 206
           I T+  L G   W ++LFP +F V
Sbjct: 227 IATLQALKGTSIWAILLFPIVFLV 250


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
           E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -1

Query: 278 NYHYLIASGCLLLDCCVVSHNIFRALPIC 192
           NY +   S  L+L C     N+  ALP+C
Sbjct: 426 NYDFGEVSIQLMLSCTTCVSNMMEALPLC 454


>SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 589

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 7/18 (38%), Positives = 15/18 (83%)
 Frame = -1

Query: 137 LLQSNIINKNVRNYLNEC 84
           L + N+++KN++++LN C
Sbjct: 529 LKKPNLVSKNLKSFLNSC 546


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -1

Query: 428  LNKLCQNHNQ*FAS*FHLLHNITQTILY 345
            LN L  NH    +  FH+ ++I +++LY
Sbjct: 1148 LNGLLFNHRSYMSGRFHVFYSILKSLLY 1175


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,882,513
Number of Sequences: 5004
Number of extensions: 34793
Number of successful extensions: 70
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)