Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_C02
         (479 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098995-12|AAC67485.1|  406|Caenorhabditis elegans Hypothetical...    28   4.0  
U53338-5|AAA96193.1|  463|Caenorhabditis elegans Hypothetical pr...    27   5.3  
Z80789-1|CAB02551.1|  708|Caenorhabditis elegans Hypothetical pr...    27   7.0  
AF304119-1|AAG50232.1|  326|Caenorhabditis elegans seven transme...    27   7.0  
AF068718-6|AAC17769.2|  326|Caenorhabditis elegans Hypothetical ...    27   7.0  
AC199170-6|ABO33264.1|  325|Caenorhabditis elegans Hypothetical ...    27   9.3  

>AF098995-12|AAC67485.1|  406|Caenorhabditis elegans Hypothetical
           protein F58E1.12 protein.
          Length = 406

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = -2

Query: 427 LTNCVRITTNSLHLNFISYTI-LH-KLFYIIALHLH*NKNHSLPKL 296
           ++ C+R+T  +LH   + YT+ LH  + Y+    L   KN  + KL
Sbjct: 174 ISYCIRLTVGNLHTEIVGYTLKLHDAINYLARSLLGGRKNIKIRKL 219


>U53338-5|AAA96193.1|  463|Caenorhabditis elegans Hypothetical
           protein C05E11.7 protein.
          Length = 463

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 9/21 (42%), Positives = 18/21 (85%)
 Frame = -1

Query: 377 LLHNITQTILYHCSSFTLKQE 315
           +L+ +++TI+Y CS F+LK++
Sbjct: 85  ILNEVSKTIMYLCSPFSLKRQ 105


>Z80789-1|CAB02551.1|  708|Caenorhabditis elegans Hypothetical
           protein F48C11.2 protein.
          Length = 708

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 13/45 (28%), Positives = 19/45 (42%)
 Frame = -1

Query: 266 LIASGCLLLDCCVVSHNIFRALPICNIGPKPCTDCQNQ*LFYILL 132
           L+  G LL  CC + H    A   C  G +   D +   +FY  +
Sbjct: 273 LLLIGLLLFLCCCICHCCMHACMFCTPGKREKEDHEMVLIFYCFI 317


>AF304119-1|AAG50232.1|  326|Caenorhabditis elegans seven
           transmembrane protein protein.
          Length = 326

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -2

Query: 415 VRITTNSLHLNFISYTILHKLFYIIAL 335
           VRI T+  HL F+S T+L   F +IA+
Sbjct: 261 VRIATSPTHLIFLSITMLMLSFGVIAI 287


>AF068718-6|AAC17769.2|  326|Caenorhabditis elegans Hypothetical
           protein R01B10.5 protein.
          Length = 326

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -2

Query: 415 VRITTNSLHLNFISYTILHKLFYIIAL 335
           VRI T+  HL F+S T+L   F +IA+
Sbjct: 261 VRIATSPTHLIFLSITMLMLSFGVIAI 287


>AC199170-6|ABO33264.1|  325|Caenorhabditis elegans Hypothetical
           protein T08D2.5 protein.
          Length = 325

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
 Frame = -1

Query: 362 TQTILYHCSSFTLKQEPFFT*TII*LQLNYH---YLIASGCLLLDCCVVSHNIFRALPI 195
           ++T  + C   T++Q  +   T I  + + H   + I S C+L D     H +   LPI
Sbjct: 4   SETSFHICRECTIQQHEYDIHTFIDQEPSIHPDAFTICSTCVLKDHNTTHHTVIEYLPI 62


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,272,912
Number of Sequences: 27780
Number of extensions: 193913
Number of successful extensions: 357
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 355
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 357
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)