Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_C01
         (305 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032630-13|CAA21568.1|  348|Caenorhabditis elegans Hypothetical...    27   3.4  
U70852-4|AAK29816.2|   93|Caenorhabditis elegans Hypothetical pr...    26   4.5  
Z49911-6|CAA90132.1|  831|Caenorhabditis elegans Hypothetical pr...    25   7.9  
U88308-19|AAB42328.1| 1927|Caenorhabditis elegans Hypothetical p...    25   7.9  
U80448-7|AAB37820.1|  260|Caenorhabditis elegans Hypothetical pr...    25   7.9  
AC199240-1|ABO33278.1|  427|Caenorhabditis elegans Hypothetical ...    25   7.9  

>AL032630-13|CAA21568.1|  348|Caenorhabditis elegans Hypothetical
           protein Y62H9A.13 protein.
          Length = 348

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
 Frame = -3

Query: 273 HKKVNE*LFSFSQSRGLGHCSDGWTSTYDCVSHSLANFLQFLEG--IPRRRRNGP 115
           + ++NE +  FS +   GH +    + YD V HSL+N +Q  E   +PR  R  P
Sbjct: 197 YDEINE-VPRFSDNPVFGHLNLPEVTIYDAVFHSLSN-VQTTESYTLPRELRTWP 249


>U70852-4|AAK29816.2|   93|Caenorhabditis elegans Hypothetical
           protein F45E4.5 protein.
          Length = 93

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +3

Query: 198 WSSRRYSGPGHGF 236
           W   RYS PGHGF
Sbjct: 40  WGRPRYSPPGHGF 52


>Z49911-6|CAA90132.1|  831|Caenorhabditis elegans Hypothetical
           protein M28.8 protein.
          Length = 831

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -3

Query: 183 VSHSLANFLQFLEGIPRRRRNGPHSEDASDNQQNNF 76
           VS +L+N  QF+  +     N P++   + NQ NN+
Sbjct: 584 VSDALSN--QFITNLQTLAANAPNTTSIAKNQNNNY 617


>U88308-19|AAB42328.1| 1927|Caenorhabditis elegans Hypothetical
           protein C32E8.11 protein.
          Length = 1927

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 4/29 (13%)
 Frame = -3

Query: 249 FSFSQSRGLGHC----SDGWTSTYDCVSH 175
           +    S G G+C    +D WT  Y C +H
Sbjct: 55  YKMHSSSGSGYCDCGDADAWTEGYACANH 83


>U80448-7|AAB37820.1|  260|Caenorhabditis elegans Hypothetical
           protein F59A3.7 protein.
          Length = 260

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = +1

Query: 19  IHIVTYFF*DLLILNMNFTKIILLVVACVFAM 114
           +H +  FF  ++++ M+F  +I+L   C F +
Sbjct: 128 LHSIFQFFISIILIRMSFWYVIVLTHICHFEL 159


>AC199240-1|ABO33278.1|  427|Caenorhabditis elegans Hypothetical
           protein 2L52.1 protein.
          Length = 427

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -3

Query: 156 QFLEGIPRRRRNGPHSEDASDNQQNNFSE 70
           +F EG  RRR+N   SED   ++  NF+E
Sbjct: 315 KFREGTRRRRKNSGESEDLKIHE--NFTE 341


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,476,124
Number of Sequences: 27780
Number of extensions: 119768
Number of successful extensions: 460
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 460
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 323034540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)