Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_B23
(437 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0235 - 27747908-27749023 31 0.53
02_04_0021 + 18975992-18976408 30 0.71
03_04_0209 + 18581667-18582155 30 0.93
08_02_1479 + 27390852-27391059,27392017-27392138,27392227-273923... 29 2.2
06_01_1069 + 8731567-8731632,8732120-8732281,8733028-8733081,873... 28 2.9
07_01_0635 + 4753919-4754090,4754200-4754258,4754377-4754432,475... 28 3.8
01_04_0063 - 15574855-15575143,15575398-15575602,15575746-155759... 28 3.8
09_03_0056 - 11936264-11939677 27 5.0
08_01_0177 + 1504472-1505033,1505035-1506647 27 5.0
07_03_1149 - 24366416-24366470,24366586-24367751,24368375-24368725 27 5.0
03_05_0723 - 27143559-27143648,27144020-27144192,27144284-271443... 27 5.0
11_04_0110 - 13539059-13539751,13539857-13540383,13541925-135424... 27 6.6
04_04_1230 + 31929261-31929386,31929497-31929643,31929974-319300... 27 6.6
07_03_1194 - 24708281-24708796,24708990-24708996,24709199-24709866 27 8.7
05_03_0372 + 13181649-13182321,13183149-13183213 27 8.7
04_04_0118 - 22889608-22890816,22891990-22892261,22892306-228931... 27 8.7
>01_06_0235 - 27747908-27749023
Length = 371
Score = 30.7 bits (66), Expect = 0.53
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 313 LVASGGSWGRLNSKRSKCMLRPAYPKIRAC 224
LV GGSW L + +CML P++ + C
Sbjct: 341 LVIVGGSWRPLEAPPPQCMLPPSHAPVEVC 370
>02_04_0021 + 18975992-18976408
Length = 138
Score = 30.3 bits (65), Expect = 0.71
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -2
Query: 265 KCMLRPAYPKIRACRKPPIPVKKFTAPTPGRP 170
+C L P PK + PP P K AP+P P
Sbjct: 92 RCALTPPPPKPKPTPPPPAPTPKPPAPSPSPP 123
>03_04_0209 + 18581667-18582155
Length = 162
Score = 29.9 bits (64), Expect = 0.93
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = -2
Query: 220 KPPIPVKKFTAPTPGRPSS 164
KPPIP KK PT +PSS
Sbjct: 116 KPPIPAKKIEQPTQKKPSS 134
>08_02_1479 +
27390852-27391059,27392017-27392138,27392227-27392350,
27392641-27392702,27392778-27392859,27393338-27393410,
27397092-27397227,27397337-27397386,27397542-27397590,
27398352-27398831
Length = 461
Score = 28.7 bits (61), Expect = 2.2
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = +3
Query: 96 LKAAQTFNESYQNYVRE--PFKVWSELGRPGVGAVNFFTGMGGF 221
L+ + SY Y+R P +E RP VG + GMGG+
Sbjct: 93 LRENEAIGASYDRYLRNGMPSVAATETNRPVVGGMGGMGGMGGY 136
>06_01_1069 +
8731567-8731632,8732120-8732281,8733028-8733081,
8733557-8733630,8733706-8733786,8734902-8735079,
8735336-8735506,8736113-8736202,8736284-8736331,
8736447-8736562,8736655-8736733,8737101-8737223
Length = 413
Score = 28.3 bits (60), Expect = 2.9
Identities = 17/63 (26%), Positives = 25/63 (39%)
Frame = -2
Query: 352 RLAPRYFIPLILKLVASGGSWGRLNSKRSKCMLRPAYPKIRACRKPPIPVKKFTAPTPGR 173
++A F+ ++L + S SK +PA P R PP P P P
Sbjct: 63 KVAENSFLVIMLSKAKASSSGASTASKAPVSQSQPATPVASVARTPP-PQAPVVTPEPAP 121
Query: 172 PSS 164
PS+
Sbjct: 122 PSA 124
>07_01_0635 +
4753919-4754090,4754200-4754258,4754377-4754432,
4754698-4754842,4755506-4755580,4755844-4755933,
4756218-4756295,4757879-4758376,4758512-4758997
Length = 552
Score = 27.9 bits (59), Expect = 3.8
Identities = 19/73 (26%), Positives = 35/73 (47%)
Frame = +3
Query: 213 GGFLQALIFGYAGLSIHLDRLEFNRPQLPPEATNFKIRGIKYLGASLTLEVQIKTTTLKV 392
G L+ L G G+ + RL +PPE K +G++ + + T+E ++ + V
Sbjct: 181 GNVLKGLDLGVEGMKVGGQRLII----VPPELAYGK-KGVQEIPPNATIEASDSSSEVSV 235
Query: 393 ASVNNDWPLTMDD 431
V +D + M+D
Sbjct: 236 NRVQDDQRMMMED 248
>01_04_0063 -
15574855-15575143,15575398-15575602,15575746-15575947,
15576038-15576613,15576623-15576786,15576826-15576928,
15577259-15577847,15578056-15578372
Length = 814
Score = 27.9 bits (59), Expect = 3.8
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -2
Query: 220 KPPIPVKKFTAPTPGRPSS 164
KPPIP KK P +PSS
Sbjct: 603 KPPIPAKKLEQPAQKKPSS 621
>09_03_0056 - 11936264-11939677
Length = 1137
Score = 27.5 bits (58), Expect = 5.0
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = +3
Query: 285 RPQLPPEATNFKIRGIKYLGASLTLEVQIKTTTLKVASVNNDWPLTMDDGI 437
+P+L PE +I + L ASL IK T L+ V++ W L+ + G+
Sbjct: 987 QPELLPEIKVIRISNCEEL-ASLPTNQLIKFTHLEDLEVSHCWSLSWEQGL 1036
>08_01_0177 + 1504472-1505033,1505035-1506647
Length = 724
Score = 27.5 bits (58), Expect = 5.0
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = -2
Query: 298 GSWGRLNSKRSKCMLRPAYPKIRACRKPPIPVKKFTAPTPGRPSSLHTL 152
G WG NSK ++ P++ + R +PV F T S++HT+
Sbjct: 401 GGWGASNSKNYSVLVPPSFKRSGDRR---LPVHTFGFGTDHDASAMHTI 446
>07_03_1149 - 24366416-24366470,24366586-24367751,24368375-24368725
Length = 523
Score = 27.5 bits (58), Expect = 5.0
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = +3
Query: 27 RGKDGPAMTWSMHSIGYLQLGDNLKAAQTFNESYQNYVREPFKVWSELGRPGV 185
+GK P+ +W++ + GY + GD KA + + Y P W + RPG+
Sbjct: 405 KGKMPPSTSWAIVAAGYAEKGDAAKAYELTKNALCVYA--PNTGW--IPRPGM 453
>03_05_0723 -
27143559-27143648,27144020-27144192,27144284-27144364,
27144556-27144609,27146556-27146574
Length = 138
Score = 27.5 bits (58), Expect = 5.0
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = -2
Query: 277 SKRSKCMLRPAYPKIRACRKPPIPVKKFTAPTPGRPSSLHTLNG 146
++RS RPA P+ R PP P ++ P P + L G
Sbjct: 2 ARRSSARSRPA-PRAAPVRNPPQPARQAPPPAPAQNGGGSILGG 44
>11_04_0110 -
13539059-13539751,13539857-13540383,13541925-13542437,
13542606-13542786
Length = 637
Score = 27.1 bits (57), Expect = 6.6
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = -2
Query: 337 YFIPLILKLVASGGSWGRLNSKRSKCMLRPAYPKIRACRKPPIPV 203
+ + L++ LV G G L CM R K R CR+ P +
Sbjct: 566 FLVMLLISLVTPGSLIGTLKFLIGGCMERQRRVKRRICRQYPFTI 610
>04_04_1230 +
31929261-31929386,31929497-31929643,31929974-31930065,
31930159-31930255,31930533-31930576,31930708-31930796,
31931083-31931174,31931266-31931412,31931539-31931644,
31931736-31931812,31932281-31932352,31932738-31932865,
31932947-31933142,31933206-31933407,31933642-31933691
Length = 554
Score = 27.1 bits (57), Expect = 6.6
Identities = 17/38 (44%), Positives = 24/38 (63%)
Frame = -2
Query: 370 ICTSRVRLAPRYFIPLILKLVASGGSWGRLNSKRSKCM 257
I +S L P++F PL+LKL+AS G RL K S+ +
Sbjct: 144 ILSSFPTLIPQFF-PLLLKLIASNGE--RLERKFSEVL 178
>07_03_1194 - 24708281-24708796,24708990-24708996,24709199-24709866
Length = 396
Score = 26.6 bits (56), Expect = 8.7
Identities = 21/47 (44%), Positives = 24/47 (51%)
Frame = +3
Query: 174 RPGVGAVNFFTGMGGFLQALIFGYAGLSIHLDRLEFNRPQLPPEATN 314
R G GA MGG L ALI G AGL L+R+ P LP + N
Sbjct: 106 RQGPGAAGRSALMGGMLLALIEG-AGLM--LNRVLATPPPLPVDDPN 149
>05_03_0372 + 13181649-13182321,13183149-13183213
Length = 245
Score = 26.6 bits (56), Expect = 8.7
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = -2
Query: 328 PLILKLVASGGSWGRLNSKRSKCMLRPAYPKIRAC 224
PL L++V + G W + R + RP I+ C
Sbjct: 110 PLFLRIVEALGEWNEYFTLRMDALNRPGISPIKKC 144
>04_04_0118 -
22889608-22890816,22891990-22892261,22892306-22893131,
22893311-22893534,22893620-22893936,22894035-22894294,
22894723-22894923,22895015-22895190,22895445-22895718
Length = 1252
Score = 26.6 bits (56), Expect = 8.7
Identities = 19/62 (30%), Positives = 33/62 (53%)
Frame = +3
Query: 75 YLQLGDNLKAAQTFNESYQNYVREPFKVWSELGRPGVGAVNFFTGMGGFLQALIFGYAGL 254
Y +G++ KA +++E+ QN ++ +K G G+G G+ AL+F YAG+
Sbjct: 226 YSYVGES-KALNSYSEAIQNTLKLGYKAGMAKGL-GIGCTY---GIACMSWALVFWYAGV 280
Query: 255 SI 260
I
Sbjct: 281 FI 282
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,173,101
Number of Sequences: 37544
Number of extensions: 245606
Number of successful extensions: 771
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 771
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 823860276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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