Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_B23
         (437 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024757-4|AAK68429.2|  371|Caenorhabditis elegans Methionine am...    33   0.12 
Z66565-2|CAA91478.2|  502|Caenorhabditis elegans Hypothetical pr...    30   0.85 
Z46241-3|CAA86317.1|  556|Caenorhabditis elegans Hypothetical pr...    29   1.5  
AC024818-3|AAF60780.2|  453|Caenorhabditis elegans Hypothetical ...    28   3.4  
Z73098-7|CAA97341.1| 1215|Caenorhabditis elegans Hypothetical pr...    27   4.5  
Z70205-10|CAA94122.2|  887|Caenorhabditis elegans Hypothetical p...    27   4.5  
Z68003-5|CAA91979.2|  887|Caenorhabditis elegans Hypothetical pr...    27   4.5  
AY313178-1|AAP79303.1|  569|Caenorhabditis elegans myotubularin-...    27   6.0  
AC024770-4|AAT68891.1|  521|Caenorhabditis elegans Mtm (myotubul...    27   6.0  
AC024770-3|AAK84604.1|  569|Caenorhabditis elegans Mtm (myotubul...    27   6.0  
Z77662-9|CAB01198.1|  456|Caenorhabditis elegans Hypothetical pr...    27   7.9  
AL117195-31|CAN99709.1| 1459|Caenorhabditis elegans Hypothetical...    27   7.9  
AL117195-30|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical...    27   7.9  

>AC024757-4|AAK68429.2|  371|Caenorhabditis elegans Methionine
           aminopeptidase protein 1 protein.
          Length = 371

 Score = 32.7 bits (71), Expect = 0.12
 Identities = 22/69 (31%), Positives = 29/69 (42%)
 Frame = +3

Query: 228 ALIFGYAGLSIHLDRLEFNRPQLPPEATNFKIRGIKYLGASLTLEVQIKTTTLKVASVNN 407
           +++ GY G  IH  RL    P +P  A N    G+   G S T+E  I   T       +
Sbjct: 268 SVVKGYCGHGIH--RLFHTAPNVPHYAKN-NATGVMKAGNSFTIEPMINAGTYHDDKWPD 324

Query: 408 DWPLTMDDG 434
           DW     DG
Sbjct: 325 DWTAVTRDG 333


>Z66565-2|CAA91478.2|  502|Caenorhabditis elegans Hypothetical
           protein T04F8.2 protein.
          Length = 502

 Score = 29.9 bits (64), Expect = 0.85
 Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 9/77 (11%)
 Frame = +3

Query: 150 FKVWSELGRPGVGAVNFFTGMGGF--------LQALIFGYAGLSIHLDRLEFNRPQLPPE 305
           + +W   GRP   AV+FFT    F            +  YA LSI      F   Q+PP 
Sbjct: 188 YDIWLTNGRPNSEAVSFFTFNFSFDEQNTVQLFLLTVVAYAILSIIQSGANFKNRQMPPR 247

Query: 306 ATNF-KIRGIKYLGASL 353
           +    +I  +K +G SL
Sbjct: 248 SVILSRIITMKLIGYSL 264


>Z46241-3|CAA86317.1|  556|Caenorhabditis elegans Hypothetical
           protein C38D4.4 protein.
          Length = 556

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +3

Query: 108 QTFNESYQNYVREPFKVWSELGRPGVGAVN--FFTGMGGFLQ 227
           Q F++S+  +V+  FK W +LG  G   V   +FT  G  L+
Sbjct: 277 QLFSKSWMMFVKTSFKEWLQLGTDGRVEVKEPWFTNFGAALK 318


>AC024818-3|AAF60780.2|  453|Caenorhabditis elegans Hypothetical
           protein Y54H5A.1 protein.
          Length = 453

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +3

Query: 15  TNRSRGKDGPAMTWSMHSIGYLQLGDNLK 101
           TN   GK+G  + WS    G L  GD +K
Sbjct: 223 TNNGSGKEGYGLAWSSLKTGDLATGDIIK 251


>Z73098-7|CAA97341.1| 1215|Caenorhabditis elegans Hypothetical
           protein T21C9.6 protein.
          Length = 1215

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 14/21 (66%), Positives = 14/21 (66%)
 Frame = -2

Query: 244 YPKIRACRKPPIPVKKFTAPT 182
           YP I A  K   PVKKFTAPT
Sbjct: 20  YPVIYAFLKWRHPVKKFTAPT 40


>Z70205-10|CAA94122.2|  887|Caenorhabditis elegans Hypothetical
           protein E02H4.3a protein.
          Length = 887

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -2

Query: 256 LRPAYPKIRACRKPPIPVKKFTAPTPGRPSSL 161
           LRP   K  + +KPP P +   AP    PS L
Sbjct: 272 LRPPVAKQNSLQKPPEPKRSVGAPPKALPSEL 303


>Z68003-5|CAA91979.2|  887|Caenorhabditis elegans Hypothetical
           protein E02H4.3a protein.
          Length = 887

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -2

Query: 256 LRPAYPKIRACRKPPIPVKKFTAPTPGRPSSL 161
           LRP   K  + +KPP P +   AP    PS L
Sbjct: 272 LRPPVAKQNSLQKPPEPKRSVGAPPKALPSEL 303


>AY313178-1|AAP79303.1|  569|Caenorhabditis elegans
           myotubularin-related protein MTM-9 protein.
          Length = 569

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +2

Query: 20  SVTREGWSSYDLEYALYRLLTVRRQFKSSS 109
           ++  +GWS++DLE    RL+     F+ SS
Sbjct: 129 TILDDGWSAFDLEQEFARLMLSTDAFRISS 158


>AC024770-4|AAT68891.1|  521|Caenorhabditis elegans Mtm
           (myotubularin) family protein9, isoform b protein.
          Length = 521

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +2

Query: 20  SVTREGWSSYDLEYALYRLLTVRRQFKSSS 109
           ++  +GWS++DLE    RL+     F+ SS
Sbjct: 81  TILDDGWSAFDLEQEFARLMLSTDAFRISS 110


>AC024770-3|AAK84604.1|  569|Caenorhabditis elegans Mtm
           (myotubularin) family protein9, isoform a protein.
          Length = 569

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +2

Query: 20  SVTREGWSSYDLEYALYRLLTVRRQFKSSS 109
           ++  +GWS++DLE    RL+     F+ SS
Sbjct: 129 TILDDGWSAFDLEQEFARLMLSTDAFRISS 158


>Z77662-9|CAB01198.1|  456|Caenorhabditis elegans Hypothetical
           protein F47B8.10 protein.
          Length = 456

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -3

Query: 420 LAASRYSQRQLLAS*FLFVLQGSDWLPDTL 331
           LA S +  + L+A   L ++QG+ W+P TL
Sbjct: 89  LAFSNHLWQMLIAMMLLGIVQGAGWVPATL 118


>AL117195-31|CAN99709.1| 1459|Caenorhabditis elegans Hypothetical
            protein Y57A10A.18b protein.
          Length = 1459

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +3

Query: 30   GKDGPAMTWSMHSIGYLQLGD-NLKAAQTFNESYQNYVREPFKVWSELG 173
            G D P+  WS ++IG   LGD    ++  FN S  ++ ++   +W+  G
Sbjct: 1234 GSDAPSSLWSWNTIG--NLGDLRPPSSNEFNSSMDSFQKD---IWAANG 1277


>AL117195-30|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical
            protein Y57A10A.18a protein.
          Length = 1456

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +3

Query: 30   GKDGPAMTWSMHSIGYLQLGD-NLKAAQTFNESYQNYVREPFKVWSELG 173
            G D P+  WS ++IG   LGD    ++  FN S  ++ ++   +W+  G
Sbjct: 1234 GSDAPSSLWSWNTIG--NLGDLRPPSSNEFNSSMDSFQKD---IWAANG 1277


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,109,687
Number of Sequences: 27780
Number of extensions: 200452
Number of successful extensions: 543
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 745968860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)