Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_B22
         (282 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy...    25   2.7  
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces...    23   6.3  
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    23   6.3  
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ...    23   8.3  
SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces pomb...    23   8.3  
SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyc...    23   8.3  

>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 24.6 bits (51), Expect = 2.7
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -2

Query: 119 YLYETFTSHHGREGCRIAWVDNWD 48
           Y+Y++      +   R  WV+NWD
Sbjct: 55  YIYKSNPGMEIKNAIRNGWVENWD 78


>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 576

 Score = 23.4 bits (48), Expect = 6.3
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -1

Query: 207 KKYLYKCITKLKFGKYYKINHHF 139
           K+ L+K  T L   + Y  N+HF
Sbjct: 245 KEVLFKVFTALDIPRPYAFNYHF 267


>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 422

 Score = 23.4 bits (48), Expect = 6.3
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +2

Query: 17  STGPAFVDFNHPNYPPKRYDNPLAR 91
           ST P    + +P+YPP  Y    AR
Sbjct: 125 STQPLPQSYGYPSYPPAGYRGGSAR 149


>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
           factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 23.0 bits (47), Expect = 8.3
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 8   EPISTGPAFVDFNHPNYP 61
           +P S  P+F+D N P+ P
Sbjct: 314 QPTSHVPSFIDTNSPSMP 331


>SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 504

 Score = 23.0 bits (47), Expect = 8.3
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 140 SPSFKIAYLYETFTSHHGREGC 75
           SP+F   +L ET+  H G + C
Sbjct: 317 SPAFCPDFLIETYLDHAGEKFC 338


>SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 852

 Score = 23.0 bits (47), Expect = 8.3
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -1

Query: 219 QIQYKKYLYKCIT 181
           QI+  K+LYKC+T
Sbjct: 268 QIEGVKFLYKCVT 280


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,053,107
Number of Sequences: 5004
Number of extensions: 17001
Number of successful extensions: 36
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 63619130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)