Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_B22
         (282 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81054-9|CAB02883.2|  540|Caenorhabditis elegans Hypothetical pr...    26   4.8  
Z81127-3|CAB03388.2|  310|Caenorhabditis elegans Hypothetical pr...    25   6.3  
U53340-2|AAA96207.1|  142|Caenorhabditis elegans Ap-2 small chai...    25   6.3  
Z47809-8|CAH10845.1|  968|Caenorhabditis elegans Hypothetical pr...    25   8.4  
Z47809-6|CAD57700.1| 1124|Caenorhabditis elegans Hypothetical pr...    25   8.4  
Z47809-5|CAD57699.1| 1019|Caenorhabditis elegans Hypothetical pr...    25   8.4  
Z47809-4|CAA87782.1| 1016|Caenorhabditis elegans Hypothetical pr...    25   8.4  
Z36719-11|CAH04695.1|  968|Caenorhabditis elegans Hypothetical p...    25   8.4  
Z36719-10|CAD57686.1| 1124|Caenorhabditis elegans Hypothetical p...    25   8.4  
Z36719-9|CAD57685.1| 1019|Caenorhabditis elegans Hypothetical pr...    25   8.4  
Z36719-8|CAA85318.1| 1016|Caenorhabditis elegans Hypothetical pr...    25   8.4  
U86640-1|AAB47273.1| 1016|Caenorhabditis elegans MEL-11 protein.       25   8.4  
U55363-5|AAA97963.1|  351|Caenorhabditis elegans Spindle orienta...    25   8.4  
AB052819-1|BAC65239.1|  351|Caenorhabditis elegans PIP-1 protein.      25   8.4  

>Z81054-9|CAB02883.2|  540|Caenorhabditis elegans Hypothetical
           protein F01D4.1 protein.
          Length = 540

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +2

Query: 149 LIL*YFPNFNLVMHLYKYFLY 211
           LI+ YF  F LV H+Y YF Y
Sbjct: 514 LIVAYFAKF-LVSHVYSYFCY 533


>Z81127-3|CAB03388.2|  310|Caenorhabditis elegans Hypothetical
           protein T22G5.3 protein.
          Length = 310

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -2

Query: 275 FFVNMLQKSKFYLNFVNYNKYNT 207
           F V +L K K  LNF NY   N+
Sbjct: 182 FKVKILPKKKLTLNFFNYENQNS 204


>U53340-2|AAA96207.1|  142|Caenorhabditis elegans Ap-2 small chain
           (clathrin associatedcomplex) protein 2 protein.
          Length = 142

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 10/34 (29%), Positives = 15/34 (44%)
 Frame = +2

Query: 164 FPNFNLVMHLYKYFLYCICCN*QSSNKIYFSVTY 265
           F NF +V   Y    +CIC +   +N  Y    +
Sbjct: 52  FRNFKIVYRRYAGLYFCICVDITDNNLYYLEAIH 85


>Z47809-8|CAH10845.1|  968|Caenorhabditis elegans Hypothetical
          protein C06C3.1d protein.
          Length = 968

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = +1

Query: 31 VRRFQSSQLSTQAIRQPSRP 90
          +RR+QSS+++ +A R+  RP
Sbjct: 30 LRRWQSSEMNAEAARRTKRP 49


>Z47809-6|CAD57700.1| 1124|Caenorhabditis elegans Hypothetical
          protein C06C3.1c protein.
          Length = 1124

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = +1

Query: 31 VRRFQSSQLSTQAIRQPSRP 90
          +RR+QSS+++ +A R+  RP
Sbjct: 30 LRRWQSSEMNAEAARRTKRP 49


>Z47809-5|CAD57699.1| 1019|Caenorhabditis elegans Hypothetical
          protein C06C3.1b protein.
          Length = 1019

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = +1

Query: 31 VRRFQSSQLSTQAIRQPSRP 90
          +RR+QSS+++ +A R+  RP
Sbjct: 30 LRRWQSSEMNAEAARRTKRP 49


>Z47809-4|CAA87782.1| 1016|Caenorhabditis elegans Hypothetical
          protein C06C3.1a protein.
          Length = 1016

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = +1

Query: 31 VRRFQSSQLSTQAIRQPSRP 90
          +RR+QSS+++ +A R+  RP
Sbjct: 30 LRRWQSSEMNAEAARRTKRP 49


>Z36719-11|CAH04695.1|  968|Caenorhabditis elegans Hypothetical
          protein C06C3.1d protein.
          Length = 968

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = +1

Query: 31 VRRFQSSQLSTQAIRQPSRP 90
          +RR+QSS+++ +A R+  RP
Sbjct: 30 LRRWQSSEMNAEAARRTKRP 49


>Z36719-10|CAD57686.1| 1124|Caenorhabditis elegans Hypothetical
          protein C06C3.1c protein.
          Length = 1124

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = +1

Query: 31 VRRFQSSQLSTQAIRQPSRP 90
          +RR+QSS+++ +A R+  RP
Sbjct: 30 LRRWQSSEMNAEAARRTKRP 49


>Z36719-9|CAD57685.1| 1019|Caenorhabditis elegans Hypothetical
          protein C06C3.1b protein.
          Length = 1019

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = +1

Query: 31 VRRFQSSQLSTQAIRQPSRP 90
          +RR+QSS+++ +A R+  RP
Sbjct: 30 LRRWQSSEMNAEAARRTKRP 49


>Z36719-8|CAA85318.1| 1016|Caenorhabditis elegans Hypothetical
          protein C06C3.1a protein.
          Length = 1016

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = +1

Query: 31 VRRFQSSQLSTQAIRQPSRP 90
          +RR+QSS+++ +A R+  RP
Sbjct: 30 LRRWQSSEMNAEAARRTKRP 49


>U86640-1|AAB47273.1| 1016|Caenorhabditis elegans MEL-11 protein.
          Length = 1016

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = +1

Query: 31 VRRFQSSQLSTQAIRQPSRP 90
          +RR+QSS+++ +A R+  RP
Sbjct: 30 LRRWQSSEMNAEAARRTKRP 49


>U55363-5|AAA97963.1|  351|Caenorhabditis elegans Spindle
           orientation defective protein4 protein.
          Length = 351

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 140 SPSFKIAYLYETFTSHHGR 84
           SP + +A LYE  TS HG+
Sbjct: 322 SPDYLLAALYEGSTSFHGK 340


>AB052819-1|BAC65239.1|  351|Caenorhabditis elegans PIP-1 protein.
          Length = 351

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 140 SPSFKIAYLYETFTSHHGR 84
           SP + +A LYE  TS HG+
Sbjct: 322 SPDYLLAALYEGSTSFHGK 340


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,737,248
Number of Sequences: 27780
Number of extensions: 92241
Number of successful extensions: 211
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 259761072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)