Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_B21
         (484 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch...    28   0.64 
SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr 2|...    27   1.1  
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    27   2.0  
SPBC359.01 ||SPBPB10D8.08|amino acid permease, unknown 7|Schizos...    26   3.4  
SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyce...    26   3.4  
SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual    25   4.5  
SPAC688.03c |||human AMMECR1 homolog|Schizosaccharomyces pombe|c...    25   6.0  
SPAC869.11 ||SPAC922.08c|amino acid permease, unknown 6|Schizosa...    25   6.0  
SPAC12G12.12 |||NST UDP-galactose transporter|Schizosaccharomyce...    25   6.0  
SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr...    25   7.9  

>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1374

 Score = 28.3 bits (60), Expect = 0.64
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -1

Query: 139  THTGAEGDFQHKEYLLDRDK 80
            THT A+GD +HK Y L +D+
Sbjct: 1254 THTKAKGDIEHKVYQLLKDQ 1273


>SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 781

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -2

Query: 162 EPSKVQPLHTLAQKATSNTKSTY*TEIKTF 73
           + +K+QPL  LA K  +N  ST   E KTF
Sbjct: 598 DSAKMQPLDVLASKRYNNAFSTETAERKTF 627


>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +3

Query: 381 ELQAYANLYLKRSYEYLLSASYFN 452
           +L  Y N++L  SY+YLLS S  N
Sbjct: 90  DLLEYLNIFLPSSYKYLLSNSGAN 113


>SPBC359.01 ||SPBPB10D8.08|amino acid permease, unknown
           7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 581

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 372 VAGELQAYANLYLKRSYEYLLSASYFNNY 458
           VAG    YA  ++  ++ + +S +YF NY
Sbjct: 138 VAGSFNTYATRFIDPAWGFAVSWNYFLNY 166


>SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 579

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 372 VAGELQAYANLYLKRSYEYLLSASYFNNY 458
           VAG    YA  ++  ++ + +S +YF NY
Sbjct: 138 VAGSFNTYATRFIDPAWGFAVSWNYFFNY 166


>SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 140 YTHWRRRRLPTQRVP 96
           +THW RR L  QR+P
Sbjct: 409 FTHWSRRLLTFQRLP 423


>SPAC688.03c |||human AMMECR1 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 204

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -1

Query: 85  DKNLPYCIGTIQTDKYVNKCLYFNRAA 5
           DK L  CIGT +    V    YF++ A
Sbjct: 60  DKQLRGCIGTFRARPLVTNLTYFSKQA 86


>SPAC869.11 ||SPAC922.08c|amino acid permease, unknown
           6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 372 VAGELQAYANLYLKRSYEYLLSASYFNNY 458
           VAG    YA  ++  ++ + +S +YF NY
Sbjct: 138 VAGGFNTYATRFIDPAWGFAVSWNYFINY 166


>SPAC12G12.12 |||NST UDP-galactose transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 324

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +3

Query: 327 GKCNAQYGEYNDYSHVAGELQAYANLYLKRSYEYLLSASYFN 452
           G   A Y  + DYSHV         LY+  S   L+S ++FN
Sbjct: 217 GSTTAGYHGWFDYSHVISRFNEVPALYV-ISGVILVSIAFFN 257


>SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1250

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = -1

Query: 70  YCIGTIQTDKYVNKCLYFN 14
           YC+ +++ D+YV+  + FN
Sbjct: 170 YCLNSLRKDQYVDLAIQFN 188


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,857,972
Number of Sequences: 5004
Number of extensions: 35237
Number of successful extensions: 105
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)