Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_B21
         (484 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0120 + 1119319-1119447,1120565-1120632,1121682-1121928,112...    30   1.1  
10_02_0148 - 5859664-5859828,5859916-5860043,5860310-5860451,586...    29   2.6  
08_02_0248 - 14757365-14757426,14758550-14758991                       29   2.6  
06_03_1065 - 27316270-27317032,27317062-27317189                       28   3.4  
11_06_0091 + 19967390-19969825                                         27   6.0  
03_02_0387 - 8016399-8016575,8016661-8016788,8017073-8017214,801...    27   6.0  
02_05_0883 - 32481502-32483085                                         27   6.0  
03_05_0883 + 28483429-28484385,28485090-28485398                       27   7.9  

>01_01_0120 +
           1119319-1119447,1120565-1120632,1121682-1121928,
           1122430-1122498,1122782-1122907,1123326-1123406,
           1123484-1123561,1124084-1124319,1124399-1124545,
           1124864-1125152,1125231-1125352,1125713-1125749
          Length = 542

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 19/60 (31%), Positives = 27/60 (45%)
 Frame = +3

Query: 57  VPIQYGRFLSRSSRYSLCWKSPSAPVCVKAALSTVRVINLIPSIHNRLGTMKKITFAVAC 236
           VP      L  S   SL  K+    V ++  +S  +V  LI S   +LG   + T+AV C
Sbjct: 255 VPAPSSYLLKSSGLKSLFVKASGVSVSIQVDVSNTKVDYLINSACEKLGVKAQDTYAVLC 314


>10_02_0148 -
           5859664-5859828,5859916-5860043,5860310-5860451,
           5860548-5860643,5860836-5860976,5861799-5861973,
           5862416-5862702,5862777-5862870,5863244-5863335,
           5863459-5863553,5863648-5863759
          Length = 508

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 7/60 (11%)
 Frame = -1

Query: 184 DGIKFITRTVESAAFTHTGAEG----DFQHKEY--LLDRDKNLPYCIGTIQTDKY-VNKC 26
           +G +  T T+ESAA  HT  +G    +F    Y  L+  +K +  C+G++  +KY V  C
Sbjct: 89  EGARIDTPTLESAAGPHTTVDGKEVVNFASANYLGLIGNEKIIDSCVGSV--EKYGVGSC 146


>08_02_0248 - 14757365-14757426,14758550-14758991
          Length = 167

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +3

Query: 327 GKCNAQYGEYNDYSHVAGELQAYANLYLKRSYEY-LLSASYFNNYKIH 467
           G  + + G   D S V G+L +  +L L+ SYEY  +   +F  +K+H
Sbjct: 120 GGSSGRKGRKGD-SSVEGDLSSRDSLELQDSYEYRFIQCHFFYKFKLH 166


>06_03_1065 - 27316270-27317032,27317062-27317189
          Length = 296

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +2

Query: 341 AIRRIQ*LQPRRWRTSGLRQPLPQAVIRISAICFIFQQLQN 463
           A RR +  + RRWR  G+ Q LP A +  +  CF  ++ Q+
Sbjct: 66  AARRRRRRRQRRWRHQGVAQLLPGAPVDHALPCFRGEERQS 106


>11_06_0091 + 19967390-19969825
          Length = 811

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 17/78 (21%), Positives = 31/78 (39%)
 Frame = +3

Query: 33  FTYLSVCIVPIQYGRFLSRSSRYSLCWKSPSAPVCVKAALSTVRVINLIPSIHNRLGTMK 212
           +  L + + P     F    + +S CW  P  P  +++ +  V +I     I +      
Sbjct: 326 YNSLKIVVDPEWLPPFRVEKAYFSSCWMGPKFPAWLQSQVYIVELIMNDAGIDDTFPDWF 385

Query: 213 KITFAVACLLALSSVYAG 266
             TF+ A  L +S+   G
Sbjct: 386 STTFSKATFLEISNNQIG 403


>03_02_0387 -
           8016399-8016575,8016661-8016788,8017073-8017214,
           8017301-8017396,8017572-8017712,8017857-8018031,
           8018443-8018575,8018661-8018733,8018807-8018900,
           8019890-8019981,8020091-8020185,8020267-8020378
          Length = 485

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 7/60 (11%)
 Frame = -1

Query: 184 DGIKFITRTVESAAFTHTGAEG----DFQHKEY--LLDRDKNLPYCIGTIQTDKY-VNKC 26
           DG +  T  +ESAA  HT  +G    +F    Y  L+  +K +  C+G++  +KY V  C
Sbjct: 89  DGARIDTPMLESAAAPHTTIDGKEVINFASANYLGLIGNEKIIDSCVGSL--EKYGVGSC 146


>02_05_0883 - 32481502-32483085
          Length = 527

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +3

Query: 102 SLCWKSPSAPVCVKAALST-VRVINLIPSIHNRLGT 206
           S C  SPS+P+  + ALS   RV+ L PS H  L T
Sbjct: 109 SACADSPSSPLARRLALSVHARVLKLFPS-HLLLST 143


>03_05_0883 + 28483429-28484385,28485090-28485398
          Length = 421

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 381 RQRRGCSHCIRRIARYTCP 325
           R  R C  C+RR AR+ CP
Sbjct: 15  RTARACDGCMRRRARWHCP 33


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,726,768
Number of Sequences: 37544
Number of extensions: 220107
Number of successful extensions: 594
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)