Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_B20
         (424 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    28   0.69 
SPAC4G9.19 |||DNAJ domain protein DNAJB family|Schizosaccharomyc...    26   2.1  
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr...    25   4.8  
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce...    25   4.8  
SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit ...    25   6.4  
SPAC1705.03c ||SPAC23H4.19|conserved fungal family|Schizosacchar...    24   8.5  
SPBC19G7.18c ||SPBC19G7.11c|sequence orphan|Schizosaccharomyces ...    24   8.5  

>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1036

 Score = 27.9 bits (59), Expect = 0.69
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +1

Query: 73  HDVTETITDLSNATEVCVTLGDGEKSWHC-TDPTNEQRSETTIQFDILR 216
           H ++  ++D +  TEV    G GE+S    ++  N Q SET + FD +R
Sbjct: 122 HILSPILSDEAFCTEVYHINGMGEESGVVYSEMQNTQSSETDVMFDCMR 170


>SPAC4G9.19 |||DNAJ domain protein DNAJB family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 26.2 bits (55), Expect = 2.1
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +2

Query: 53  IVYERSFMMSLRQSPISQTPPKCALPSAMVKNPGT 157
           I+ E+S  +  +Q P S  PP+ ALP+  +  P +
Sbjct: 236 ILREQSKQIPTQQKPSSLPPPERALPAPTMPTPSS 270


>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
           heterochromatin assembly Hrr1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1015

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 395 RFTEIKLILDFKITYVNFQIQQPRCWDVYKHVL 297
           +F +I + LD +  YV  +      W+ YKHVL
Sbjct: 278 KFEDISISLDPREEYVMIEATSGY-WEAYKHVL 309


>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 993

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +1

Query: 19  YSLLNDAWRNQDRV*TVVHDVTETITDLSNATEV 120
           Y LLN ++  ++RV   + D+ +T   LSN  +V
Sbjct: 117 YLLLNVSYDTEERVHISISDLNQTQFQLSNRRDV 150


>SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit
           Rrn6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 868

 Score = 24.6 bits (51), Expect = 6.4
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -3

Query: 47  FLQASLSRLYRLVCS 3
           F Q SLSRLY ++CS
Sbjct: 584 FQQLSLSRLYHVLCS 598


>SPAC1705.03c ||SPAC23H4.19|conserved fungal
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +1

Query: 190 TTIQFDILRRI-TGNFQHGSLNIYFKFKSLINVS**YNT 303
           TT  FD +  +  GN +  + N+YF   +L N+S  Y T
Sbjct: 205 TTATFDGISNVFIGNLKSAAGNLYFSNTTLDNISVPYLT 243


>SPBC19G7.18c ||SPBC19G7.11c|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 252

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
 Frame = +2

Query: 53  IVYERSFMMSLR-QSPISQTPPKCALPSAMVKNPGTVPILQTNNVRKPRSNSISFDESQE 229
           ++ +R+ M   R  S  S+ PPK    ++  + PG++P    ++ + P +NS S ++   
Sbjct: 104 LIRQRTTMRQGRFPSSSSEFPPK----NSKYQLPGSMPNTGASSSQDPFTNSQSTEKEDA 159

Query: 230 TFSMD 244
            +S D
Sbjct: 160 MYSKD 164


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,728,270
Number of Sequences: 5004
Number of extensions: 33884
Number of successful extensions: 75
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)