Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_B20
(424 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0159 + 1193479-1194435,1194509-1194652,1194735-1194821,119... 34 0.041
01_01_0090 + 706340-707296,707370-707513,707596-707682,707771-70... 34 0.041
01_01_0089 - 699533-699643,699738-700046,700134-700220,700298-70... 34 0.041
10_05_0064 + 8712503-8712507,8714248-8714358,8715018-8715630 30 0.67
08_02_1323 - 26136015-26137876,26138300-26139229,26139922-261400... 28 3.6
01_03_0014 + 11655216-11655287,11657833-11658048,11659848-116619... 28 3.6
06_01_0320 - 2320317-2320336,2320791-2320902,2321092-2321236,232... 27 4.7
02_02_0017 - 6131265-6131284,6131654-6131774,6132011-6132146,613... 27 4.7
02_02_0016 - 6118739-6118758,6119116-6119236,6119478-6119613,611... 27 4.7
01_01_0237 - 1972699-1972796,1973618-1974334,1975387-1976191 27 6.2
>06_01_0159 +
1193479-1194435,1194509-1194652,1194735-1194821,
1194910-1195244,1195600-1195840,1195921-1195995,
1196072-1196157,1196591-1196663,1196805-1197535,
1197613-1197784,1197862-1197948,1198255-1198344,
1198439-1198549
Length = 1062
Score = 34.3 bits (75), Expect = 0.041
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Frame = +2
Query: 2 SSTPGG--TVYSTTPGGTRIVYERSFMMSLRQSPISQTPPKCALPSAMVKNPGTVPILQT 175
S+ PGG +VY + P ++Y F+ S +S +SQTP C +MV T + +T
Sbjct: 300 STKPGGVASVYISGPVTVLLLYYLDFLKSKSESDVSQTPRICYYGESMV----TDLVQET 355
Query: 176 NNVRKPRSNSISFDESQET 232
R +++ F ++ET
Sbjct: 356 MQKDGKRFDNLKFRTTEET 374
>01_01_0090 +
706340-707296,707370-707513,707596-707682,707771-708105,
708462-708702,708783-708857,708932-709017,709451-709523,
709637-709961,710092-711750,711938-713322
Length = 1788
Score = 34.3 bits (75), Expect = 0.041
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Frame = +2
Query: 2 SSTPGG--TVYSTTPGGTRIVYERSFMMSLRQSPISQTPPKCALPSAMVKNPGTVPILQT 175
S+ PGG +VY + P ++Y F+ S +S +SQTP C +MV T + +T
Sbjct: 300 STKPGGVASVYISGPVTVLLLYYLDFLKSKSESDVSQTPRICYYGESMV----TDLVQET 355
Query: 176 NNVRKPRSNSISFDESQET 232
R +++ F ++ET
Sbjct: 356 MQKDGKRFDNLKFRTTEET 374
>01_01_0089 -
699533-699643,699738-700046,700134-700220,700298-700469,
700547-701373,701487-701559,701993-702078,702153-702227,
702308-702548,702905-703239,703328-703414,703497-703640,
703714-704670
Length = 1167
Score = 34.3 bits (75), Expect = 0.041
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Frame = +2
Query: 2 SSTPGG--TVYSTTPGGTRIVYERSFMMSLRQSPISQTPPKCALPSAMVKNPGTVPILQT 175
S+ PGG +VY + P ++Y F+ S +S +SQTP C +MV T + +T
Sbjct: 300 STKPGGVASVYISGPVTVLLLYYLDFLKSKSESDVSQTPRICYYGESMV----TDLVQET 355
Query: 176 NNVRKPRSNSISFDESQET 232
R +++ F ++ET
Sbjct: 356 MQKDGKRFDNLKFRTTEET 374
>10_05_0064 + 8712503-8712507,8714248-8714358,8715018-8715630
Length = 242
Score = 30.3 bits (65), Expect = 0.67
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +3
Query: 105 KRHRSVRYPRRW*KILALYRSYKRTTF 185
K+ ++ +PRRW K +A+YR Y R ++
Sbjct: 30 KKIKNSSFPRRWCKTVAIYRLYYRCSY 56
>08_02_1323 -
26136015-26137876,26138300-26139229,26139922-26140068,
26140139-26140360,26140513-26140555
Length = 1067
Score = 27.9 bits (59), Expect = 3.6
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Frame = +1
Query: 79 VTETITDLSNATEVCVTLGDGEKSWHCTDPTNEQRSETT----IQFDILRRITGNFQH 240
V+E LS TE CV +GD H N+ ++ T IQ ++ R+T N H
Sbjct: 146 VSEVQVGLSKCTEDCVVIGD-----HIPPSGNDSKASGTENDEIQSGVVTRLTENVPH 198
>01_03_0014 +
11655216-11655287,11657833-11658048,11659848-11661912,
11662966-11663013,11663081-11663328,11663429-11663558,
11663707-11663983,11664102-11664180,11664311-11664397,
11664586-11664618
Length = 1084
Score = 27.9 bits (59), Expect = 3.6
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +1
Query: 184 SETTIQFDILRRITGNFQHGSL 249
S +TI DIL++IT NF + SL
Sbjct: 828 SASTISLDILKKITRNFSNNSL 849
>06_01_0320 -
2320317-2320336,2320791-2320902,2321092-2321236,
2321353-2321459,2321572-2321665,2321752-2321948,
2322311-2322382,2322504-2322618,2323060-2323176,
2323253-2323344,2323445-2323621,2323746-2323820,
2323911-2324051,2324671-2324859,2325298-2325363,
2325445-2325595,2325718-2325786,2326293-2326441,
2326526-2326657,2326756-2327081,2327167-2327203,
2327926-2327980,2328242-2328309,2328464-2328466
Length = 902
Score = 27.5 bits (58), Expect = 4.7
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = +1
Query: 100 LSNATEVCVTLGDGEKSWHCTDPTNEQRSETTIQFDILRRITGNFQHGSLNIYFKFKSL 276
LS++ ++ + L D +K W CT E S +Q + T F SL+ K SL
Sbjct: 110 LSSSDDMLIKLWDWDKGWMCTQ-IFEGHSHYVMQVTFNPKDTNTFASASLDRTTKIWSL 167
>02_02_0017 -
6131265-6131284,6131654-6131774,6132011-6132146,
6132423-6132529,6133006-6133099,6133199-6133395,
6134401-6134472,6135128-6135304,6135393-6135467,
6135557-6135697,6136439-6136627,6136969-6137034,
6137118-6137268,6137596-6137664,6138751-6138899,
6138969-6139100,6139198-6139523,6139599-6139635,
6139765-6139803,6140196-6140250,6140363-6140424,
6140512-6140532,6140820-6140822
Length = 812
Score = 27.5 bits (58), Expect = 4.7
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = +1
Query: 100 LSNATEVCVTLGDGEKSWHCTDPTNEQRSETTIQFDILRRITGNFQHGSLNIYFKFKSL 276
LS++ ++ + L D +K W CT E S +Q + T F SL+ K SL
Sbjct: 128 LSSSDDMLIKLWDWDKGWMCTQ-IFEGHSHYVMQVTFNPKDTNTFASASLDRTVKVWSL 185
>02_02_0016 -
6118739-6118758,6119116-6119236,6119478-6119613,
6119887-6119993,6120316-6120409,6120509-6120705,
6121872-6121943,6122597-6122773,6122862-6122936,
6123027-6123167,6123837-6124025,6124415-6124480,
6124564-6124714,6125040-6125200,6126279-6126410,
6126508-6126833,6126906-6126942,6127056-6127088,
6127500-6127554,6127666-6127753,6127817-6127862
Length = 807
Score = 27.5 bits (58), Expect = 4.7
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = +1
Query: 100 LSNATEVCVTLGDGEKSWHCTDPTNEQRSETTIQFDILRRITGNFQHGSLNIYFKFKSL 276
LS++ ++ + L D +K W CT E S +Q + T F SL+ K SL
Sbjct: 142 LSSSDDMLIKLWDWDKGWMCTQ-IFEGHSHYVMQVTFNPKDTNTFASASLDRTVKVWSL 199
>01_01_0237 - 1972699-1972796,1973618-1974334,1975387-1976191
Length = 539
Score = 27.1 bits (57), Expect = 6.2
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +2
Query: 2 SSTPGGTVYSTTPGGTRIVYERSFMMSLRQSPISQTPPKCA 124
SS G T + +P +V+ + S RQ PIS P CA
Sbjct: 366 SSDLGLTQFKISPINRELVFLYNCSQSRRQLPISWAPVSCA 406
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,680,404
Number of Sequences: 37544
Number of extensions: 200092
Number of successful extensions: 506
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 506
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 778540620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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