Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_B20
         (424 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117205-5|CAB55163.1|  456|Caenorhabditis elegans Hypothetical ...    35   0.021
AL117205-4|CAB55162.1|  441|Caenorhabditis elegans Hypothetical ...    31   0.26 
Z81460-5|CAB03832.1|  952|Caenorhabditis elegans Hypothetical pr...    31   0.34 
Z70209-3|CAA94147.1|  952|Caenorhabditis elegans Hypothetical pr...    31   0.34 
U53332-5|AAK31535.2|  821|Caenorhabditis elegans Related to yeas...    27   5.5  
DQ178636-1|ABD75715.1|  826|Caenorhabditis elegans vacuolar prot...    27   5.5  
AF125459-7|AAD12836.1|  971|Caenorhabditis elegans Hypothetical ...    27   7.3  
Z81473-1|CAB03897.1|  302|Caenorhabditis elegans Hypothetical pr...    26   9.7  

>AL117205-5|CAB55163.1|  456|Caenorhabditis elegans Hypothetical
           protein Y116A8A.6 protein.
          Length = 456

 Score = 35.1 bits (77), Expect = 0.021
 Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 2/82 (2%)
 Frame = +2

Query: 8   TPGGTVYSTTPGGTRIVYERSFMMSLRQSPISQTPPKCALPSAMVKN--PGTVPILQTNN 181
           TP  T  ST         E + M +   SPIS  P     PS +  +  P T P+LQ  +
Sbjct: 294 TPVTTERSTVSTTISTSLETTIMQASSASPISSKPATTTEPSPLQASSKPATEPLLQPES 353

Query: 182 VRKPRSNSISFDESQETFSMDL 247
            R   S++ S  E Q T   ++
Sbjct: 354 ARTASSSASSKPEVQTTIPTEI 375


>AL117205-4|CAB55162.1|  441|Caenorhabditis elegans Hypothetical
           protein Y116A8A.4 protein.
          Length = 441

 Score = 31.5 bits (68), Expect = 0.26
 Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 2/82 (2%)
 Frame = +2

Query: 8   TPGGTVYSTTPGGTRIVYERSFMMSLRQSPISQTPPKCALPSAMVKN--PGTVPILQTNN 181
           TP  T  ST         E + M +   SP S  P     PS +  +  P T P+L+  +
Sbjct: 294 TPVTTEKSTVSTTISTSLETTIMQASSASPTSIKPSTTTEPSPLQASSKPATEPLLRPES 353

Query: 182 VRKPRSNSISFDESQETFSMDL 247
            R+  S++ S  E Q T   ++
Sbjct: 354 TRRASSSASSKPEVQTTIPTEI 375


>Z81460-5|CAB03832.1|  952|Caenorhabditis elegans Hypothetical
           protein C04A11.4 protein.
          Length = 952

 Score = 31.1 bits (67), Expect = 0.34
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = -3

Query: 413 HLDGIKRFTEIKLILDFKITYVNFQIQQPRCWDVYKHVLYY*LTLINDLNLK 258
           HLDG KRF E+ L+ D+ + Y  +   + +  D  +  +    +L   LN++
Sbjct: 171 HLDGRKRFVELALVADYSV-YTKYDSDEKKVNDYMQQTMNILNSLYFPLNIR 221


>Z70209-3|CAA94147.1|  952|Caenorhabditis elegans Hypothetical
           protein C04A11.4 protein.
          Length = 952

 Score = 31.1 bits (67), Expect = 0.34
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = -3

Query: 413 HLDGIKRFTEIKLILDFKITYVNFQIQQPRCWDVYKHVLYY*LTLINDLNLK 258
           HLDG KRF E+ L+ D+ + Y  +   + +  D  +  +    +L   LN++
Sbjct: 171 HLDGRKRFVELALVADYSV-YTKYDSDEKKVNDYMQQTMNILNSLYFPLNIR 221


>U53332-5|AAK31535.2|  821|Caenorhabditis elegans Related to yeast
           vacuolar proteinsorting factor protein 35 protein.
          Length = 821

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -2

Query: 246 RSMLKVSCDSSKDIELDRGFRTLFVCRIGTVPGFFTIAE 130
           R +L+ S    +D + D   R +FVC +GT+    + AE
Sbjct: 555 RLVLQFSDMKDEDDKWDAKIRKMFVCAMGTIGALVSTAE 593


>DQ178636-1|ABD75715.1|  826|Caenorhabditis elegans vacuolar protein
           sorting factor protein.
          Length = 826

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -2

Query: 246 RSMLKVSCDSSKDIELDRGFRTLFVCRIGTVPGFFTIAE 130
           R +L+ S    +D + D   R +FVC +GT+    + AE
Sbjct: 560 RLVLQFSDMKDEDDKWDAKIRKMFVCAMGTIGALVSTAE 598


>AF125459-7|AAD12836.1|  971|Caenorhabditis elegans Hypothetical
           protein Y25C1A.5 protein.
          Length = 971

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +1

Query: 40  WRNQDRV*TVVHDVTETITDLSNATEVCVTLGDGEKSWHC 159
           W N+  V T + D+ + +  LS +T + V  GD      C
Sbjct: 858 WENKVNVMTPIRDLRDFLNHLSTSTNMKVLTGDAAIEGDC 897


>Z81473-1|CAB03897.1|  302|Caenorhabditis elegans Hypothetical
           protein C17D12.1a protein.
          Length = 302

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = +2

Query: 134 AMVKNPGTVPILQT--NNVRKPRSNSISFDESQE 229
           AM+ +PGTVPI  +   N   P  +S   DES E
Sbjct: 62  AMLSDPGTVPISSSKGQNTPNPVFSSDEEDESDE 95


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,501,985
Number of Sequences: 27780
Number of extensions: 189327
Number of successful extensions: 570
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 692685370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)