Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_B19
         (377 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    27   0.74 
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    27   1.3  
SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|ch...    25   3.9  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   3.9  

>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 27.5 bits (58), Expect = 0.74
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +2

Query: 212 PAPYPGPVEHKVLPAEPHNGHGPYGPNSYKYSETT 316
           PAP+PG      +P  P     P  P SY  SE++
Sbjct: 536 PAPFPGYPAVPAMPGIPGATAPPGAPGSYNTSESS 570


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 26.6 bits (56), Expect = 1.3
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +2

Query: 278 PYGPNSYKYSETTYSTHNTTQRFPGSPSPS 367
           PY  NS     TT ST  +   F  SPSP+
Sbjct: 509 PYYSNSSIIVPTTVSTSGSVSSFSSSPSPT 538


>SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 530

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +2

Query: 263 HNGHGPYGPNSYKYSETTYSTHNTTQRFP 349
           H+   PYGP+S  Y+     T  TTQ  P
Sbjct: 10  HDKVFPYGPSSNGYNPVIRLTDRTTQPDP 38


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +2

Query: 269 GHGPYGPNSYKYSETTYSTHNTTQRFPGSPSPS 367
           G  P  P++++      ST+N  + + GSP+P+
Sbjct: 288 GFNPNQPSNFRSPNRAPSTNNRYRGWNGSPTPA 320


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,444,836
Number of Sequences: 5004
Number of extensions: 29256
Number of successful extensions: 64
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)