Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_B17
(540 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1183.04c |pet127||mitochondrial membrane protein Pet127|Schi... 27 1.3
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces... 27 1.3
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom... 27 1.8
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 26 3.1
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p... 26 4.1
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf... 26 4.1
SPCC338.08 |ctp1|mug38|sequence orphan|Schizosaccharomyces pombe... 25 7.2
SPCC645.13 |||transcription elongation regulator|Schizosaccharom... 25 7.2
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo... 25 9.5
SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein L37|S... 25 9.5
>SPCC1183.04c |pet127||mitochondrial membrane protein
Pet127|Schizosaccharomyces pombe|chr 3|||Manual
Length = 524
Score = 27.5 bits (58), Expect = 1.3
Identities = 15/55 (27%), Positives = 26/55 (47%)
Frame = +3
Query: 51 RAFYSSDHEYNRTALGDAIDKTSLQFLKETYTSSKDKNVVSSPLGVMMLMLLYKA 215
+ FY S +E N T L + + + Y KDK++ P ++LM + K+
Sbjct: 158 KGFYISPNERNFTRLCRSASSVHISYQNGLYCIDKDKSLTKEPSVNIILMNVGKS 212
>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 637
Score = 27.5 bits (58), Expect = 1.3
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +3
Query: 63 SSDHEYNRTALGDAIDKTSLQFLKETYTSSKDKNVVSSPLGVMMLM 200
S H+ N + L + + + K YT +KD ++V SP G+ M
Sbjct: 299 SPQHQANPSTLNNPLKTQNFDSSKNLYTDNKDSSLV-SPTGLQSRM 343
>SPBC30B4.04c |sol1||SWI/SNF complex subunit
Sol1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 865
Score = 27.1 bits (57), Expect = 1.8
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = -1
Query: 279 PRYNLHCLKTCRSPHDYLHRRQLCTEALAS 190
P++N HCLK C L + C A S
Sbjct: 711 PKFNRHCLKICERRLPLLQQSFFCLAATVS 740
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 26.2 bits (55), Expect = 3.1
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 1 RT*SSYVYWRLSRSATCERFIPLTTSTTGQP 93
R+ S+Y+ + S A CE FI L + G+P
Sbjct: 940 RSDSNYISIKESGYAICEEFIDLLIKSNGEP 970
>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1040
Score = 25.8 bits (54), Expect = 4.1
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +3
Query: 108 DKTSLQFLKETYTSSKDKNVVSSPLGVMMLMLLYKAGAGE 227
D +S+ +T S +N++ +GV +LL +G+GE
Sbjct: 535 DNSSISCAFQTNVPSLPRNIILEGVGVDRNLLLVSSGSGE 574
>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1339
Score = 25.8 bits (54), Expect = 4.1
Identities = 17/82 (20%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Frame = +3
Query: 60 YSSDHEYNRTALGDAIDKTSLQFLKETYTSSKDKNVVSSPLGVMMLMLLYKAGAGEGSRA 239
Y+S E++ + + K S++ K +TS +D+ ++ + +++ +Y G +
Sbjct: 864 YASVEEFDYFSSTEHASKRSVKRFKNDFTSDEDETLIRA----VVITQIYYGGTNRLIKW 919
Query: 240 E-IDKFLGNGDYSGVANPYISL 302
E + K N D + Y+S+
Sbjct: 920 EAVQKCFPNRDIYALTRRYLSI 941
>SPCC338.08 |ctp1|mug38|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 285
Score = 25.0 bits (52), Expect = 7.2
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = -3
Query: 532 WCHQRIGDLIGPRVFSLAH*LMMSAAFLVSLKSIVSTSLW 413
WC + ++ + +L M A++V+L IVS +LW
Sbjct: 243 WCFSSMSYMVQSKKAALRLLGMTKTAWVVALYPIVSINLW 282
>SPCC645.13 |||transcription elongation
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 721
Score = 25.0 bits (52), Expect = 7.2
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +1
Query: 34 SRSATCERFIPLTTSTTGQP 93
SR + ER P+TTST G P
Sbjct: 630 SRHESVERATPITTSTNGIP 649
>SPBC31F10.10c |||zf-MYND type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 574
Score = 24.6 bits (51), Expect = 9.5
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +3
Query: 138 TYTSSKDKNVVSSPLGVMMLMLLYKAGAGE 227
T TS K + +++ G+M LM + +AG G+
Sbjct: 47 TSTSPKIREILTMDGGLMRLMNILRAGRGQ 76
>SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein
L37|Schizosaccharomyces pombe|chr 3|||Manual
Length = 91
Score = 24.6 bits (51), Expect = 9.5
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -2
Query: 137 FLKKLQRSFVNGIA*GCPVVLV 72
+LKK+ RSF NG G P V
Sbjct: 66 YLKKVHRSFKNGFRSGKPAAAV 87
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,239,735
Number of Sequences: 5004
Number of extensions: 46640
Number of successful extensions: 167
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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