Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_B15
(343 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channe... 24 0.58
DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride c... 23 0.77
DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride c... 23 0.77
AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl sub... 23 0.77
DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chlor... 22 2.4
DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chlor... 22 2.4
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 22 2.4
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 21 3.1
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 21 4.1
AY338499-1|AAR08420.1| 500|Apis mellifera Kruppel-like protein ... 21 4.1
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 21 5.4
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 21 5.4
AF388659-1|AAK71995.1| 782|Apis mellifera 1D-myo-inositol-trisp... 20 7.2
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 20 9.5
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 20 9.5
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 20 9.5
>DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channel
protein.
Length = 489
Score = 23.8 bits (49), Expect = 0.58
Identities = 8/16 (50%), Positives = 9/16 (56%)
Frame = +3
Query: 120 PIDKGTCRAEFPSYGY 167
P+D C E SYGY
Sbjct: 169 PLDSQNCTVEIESYGY 184
>DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 23.4 bits (48), Expect = 0.77
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Frame = +3
Query: 66 IVHTVICSVKEPAPECLQ--PIDKGTCRAEFPSYGY 167
I ++ ++ P LQ P+D+ C E S+GY
Sbjct: 126 ITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGY 161
>DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 23.4 bits (48), Expect = 0.77
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Frame = +3
Query: 66 IVHTVICSVKEPAPECLQ--PIDKGTCRAEFPSYGY 167
I ++ ++ P LQ P+D+ C E S+GY
Sbjct: 126 ITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGY 161
>AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl
subunit protein.
Length = 365
Score = 23.4 bits (48), Expect = 0.77
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Frame = +3
Query: 66 IVHTVICSVKEPAPECLQ--PIDKGTCRAEFPSYGY 167
I ++ ++ P LQ P+D+ C E S+GY
Sbjct: 65 ITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGY 100
>DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 21.8 bits (44), Expect = 2.4
Identities = 7/20 (35%), Positives = 11/20 (55%)
Frame = +3
Query: 114 LQPIDKGTCRAEFPSYGYNS 173
L P+D+ C SYG+ +
Sbjct: 166 LYPLDRQVCSLRMASYGWTT 185
>DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 21.8 bits (44), Expect = 2.4
Identities = 7/20 (35%), Positives = 11/20 (55%)
Frame = +3
Query: 114 LQPIDKGTCRAEFPSYGYNS 173
L P+D+ C SYG+ +
Sbjct: 166 LYPLDRQVCSLRMASYGWTT 185
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 21.8 bits (44), Expect = 2.4
Identities = 10/36 (27%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = +3
Query: 66 IVHTVICSVKEPAPECLQ--PIDKGTCRAEFPSYGY 167
++++ ++K P L+ P+D C +F S+GY
Sbjct: 118 VLYSSRLTIKAGCPMNLENFPMDTQRCPLQFGSFGY 153
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 21.4 bits (43), Expect = 3.1
Identities = 8/26 (30%), Positives = 14/26 (53%)
Frame = +3
Query: 120 PIDKGTCRAEFPSYGYNSSTKTCELF 197
P D+ TC +F S+ +N + L+
Sbjct: 159 PFDQQTCIMKFGSWTFNGDQVSLALY 184
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 21.0 bits (42), Expect = 4.1
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +3
Query: 120 PIDKGTCRAEFPSYGYNSST 179
P D+ TC +F S+ Y+ T
Sbjct: 153 PFDEQTCFMKFGSWTYDGYT 172
>AY338499-1|AAR08420.1| 500|Apis mellifera Kruppel-like protein 1
protein.
Length = 500
Score = 21.0 bits (42), Expect = 4.1
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +3
Query: 135 TCRAEFPSYGYNSSTKTCELFYYG 206
TC S+GYN K ++ +YG
Sbjct: 233 TCDICGKSFGYNHVLKLHQVAHYG 256
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 20.6 bits (41), Expect = 5.4
Identities = 7/18 (38%), Positives = 10/18 (55%)
Frame = -2
Query: 267 RCRLPHTQVECRIDWSYP 214
+C +P + I WSYP
Sbjct: 604 QCIVPTGDLPLNIRWSYP 621
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 20.6 bits (41), Expect = 5.4
Identities = 7/19 (36%), Positives = 12/19 (63%)
Frame = +3
Query: 120 PIDKGTCRAEFPSYGYNSS 176
P D+ +C +F S+ YN +
Sbjct: 166 PFDEQSCIMKFGSWTYNGA 184
>AF388659-1|AAK71995.1| 782|Apis mellifera
1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
Length = 782
Score = 20.2 bits (40), Expect = 7.2
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = -2
Query: 210 SRRNRTVRTFSLNYYIRNLGTLLCRYLCQ 124
SRRN SL + L LL R LC+
Sbjct: 54 SRRNGRHNVHSLAFGAIQLRQLLKRQLCE 82
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 19.8 bits (39), Expect = 9.5
Identities = 7/17 (41%), Positives = 11/17 (64%)
Frame = +3
Query: 120 PIDKGTCRAEFPSYGYN 170
P D+ TC +F S+ Y+
Sbjct: 161 PFDEQTCVLKFGSWTYD 177
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 19.8 bits (39), Expect = 9.5
Identities = 7/17 (41%), Positives = 11/17 (64%)
Frame = +3
Query: 120 PIDKGTCRAEFPSYGYN 170
P D+ TC +F S+ Y+
Sbjct: 157 PFDEQTCVMKFGSWTYD 173
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 19.8 bits (39), Expect = 9.5
Identities = 7/17 (41%), Positives = 11/17 (64%)
Frame = +3
Query: 120 PIDKGTCRAEFPSYGYN 170
P D+ TC +F S+ Y+
Sbjct: 153 PFDQQTCFMKFGSWTYD 169
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,080
Number of Sequences: 438
Number of extensions: 1688
Number of successful extensions: 16
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used: 7839909
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)
- SilkBase 1999-2023 -