Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_B13
         (466 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0863 - 8179535-8179774,8180301-8180364,8180505-8180896           28   3.2  
04_04_0002 + 22082633-22083574,22083691-22084137,22084354-22084974     28   3.2  
03_05_0517 - 25118232-25118730,25119002-25119273                       28   3.2  
03_02_0269 + 7001891-7002212,7003598-7004037                           28   3.2  
11_04_0321 - 16359390-16359539,16359674-16359746,16360448-163608...    27   5.6  
08_01_0381 - 3382316-3382459,3382872-3382907,3383323-3383429,338...    27   5.6  

>12_01_0863 - 8179535-8179774,8180301-8180364,8180505-8180896
          Length = 231

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -2

Query: 168 GSGFATTTWSLLPSDRNTTIVHHVNSVCGTHGQYRRRRK 52
           G+G  +T    +PS R TT+   V+S CGT G     R+
Sbjct: 26  GAGGDSTRIRPVPSTRATTVRGSVDSDCGTGGSVAGNRR 64


>04_04_0002 + 22082633-22083574,22083691-22084137,22084354-22084974
          Length = 669

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = -1

Query: 115 HYCPPRELCLRHPWPIPAKKKNTNSFH 35
           HY PPR    R  WP P+K  N   FH
Sbjct: 587 HYLPPR---WRRTWPSPSKALNGAYFH 610


>03_05_0517 - 25118232-25118730,25119002-25119273
          Length = 256

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = +2

Query: 164 DPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPPKRY 274
           D FF++    P GN     T P  VD   P  P + +
Sbjct: 37  DWFFTRKGESPQGNISKEETAPTGVDVTDPGRPGRAF 73


>03_02_0269 + 7001891-7002212,7003598-7004037
          Length = 253

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -3

Query: 299 SHHGREGCRIAWVDNWDD*NRR 234
           + H R+  R+AW D W D +R+
Sbjct: 62  TEHARQRMRVAWADGWVDGSRK 83


>11_04_0321 -
           16359390-16359539,16359674-16359746,16360448-16360845,
           16360919-16362673,16362751-16362861,16363745-16363962,
           16364088-16364196
          Length = 937

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +2

Query: 257 YPPKRYDNPLARGGK 301
           YPPKRY NP+   G+
Sbjct: 859 YPPKRYSNPVGPAGR 873


>08_01_0381 -
           3382316-3382459,3382872-3382907,3383323-3383429,
           3383518-3383587,3383839-3384663,3384748-3385044,
           3385175-3385501,3385760-3386046,3386728-3386896
          Length = 753

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -1

Query: 175 EERIRVRNNHVVTIAVRSEHHYCPPRELCLRHPWPIPAK 59
           EE +R      +T  +RSE    P  ++C   PW +P K
Sbjct: 20  EELVRHYLKGKITGQIRSEADVIPEIDVCKCEPWDLPDK 58


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,315,632
Number of Sequences: 37544
Number of extensions: 268770
Number of successful extensions: 733
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 931320312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)