Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_B12
(577 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 70 2e-13
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch... 46 3e-06
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 46 5e-06
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 44 2e-05
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 43 3e-05
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 43 4e-05
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 42 5e-05
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 41 1e-04
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 41 1e-04
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 37 0.002
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 32 0.069
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 31 0.091
SPBC1198.05 |||guanylate kinase |Schizosaccharomyces pombe|chr 2... 29 0.37
SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr 1||... 29 0.49
SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces pomb... 27 2.6
SPAC637.07 |moe1||translation initiation factor eIF3d Moe1|Schiz... 26 3.4
SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr 1|||... 26 3.4
SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces ... 25 6.0
SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr 2... 25 7.9
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 70.1 bits (164), Expect = 2e-13
Identities = 35/86 (40%), Positives = 52/86 (60%)
Frame = +3
Query: 315 KPFKVMVLGQSGVGKSALVVRFITRRFIGEYDPNLEKIYGFQTVIDNEMVYFEILDSAGD 494
+ +K++V+G GVGKSAL ++ I F+ EYDP +E Y + ID E ++LD+AG
Sbjct: 7 REYKLVVVGDGGVGKSALTIQLIQSHFVDEYDPTIEDSYRKKCEIDGEGALLDVLDTAG- 65
Query: 495 AQEGEYANLENNIRWAEAFILMYPVT 572
QE A E +R E F+L+Y +T
Sbjct: 66 -QEEYSAMREQYMRTGEGFLLVYNIT 90
>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 185
Score = 46.4 bits (105), Expect = 3e-06
Identities = 25/86 (29%), Positives = 44/86 (51%)
Frame = +3
Query: 315 KPFKVMVLGQSGVGKSALVVRFITRRFIGEYDPNLEKIYGFQTVIDNEMVYFEILDSAGD 494
K ++ VLG VGKS+L V+++ F+ Y P +E + + EI+D+AG
Sbjct: 5 KSRRIAVLGSRSVGKSSLTVQYVENHFVESYYPTIENTFSKNIKYKGQEFATEIIDTAGQ 64
Query: 495 AQEGEYANLENNIRWAEAFILMYPVT 572
E N +++I ++L+Y +T
Sbjct: 65 -DEYSILNSKHSI-GIHGYVLVYSIT 88
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 45.6 bits (103), Expect = 5e-06
Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Frame = +3
Query: 321 FKVMVLGQSGVGKSALVVRFITRRFIGEYDPNLEKIYGFQTV-IDNEMVYFEILDSAGDA 497
FK++++G SGVGKS L++RF + Y + + +T ++ + V +I D+AG
Sbjct: 9 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDTAG-- 66
Query: 498 QEGEYANLENNIRWAEAFILMYPVTD 575
QE + R A I++Y VTD
Sbjct: 67 QERFRTITSSYYRGAHGIIIVYDVTD 92
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 44.0 bits (99), Expect = 2e-05
Identities = 25/90 (27%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
Frame = +3
Query: 309 KQKPFKVMVLGQSGVGKSALVVRFITRRFIGEYDPNL-EKIYGFQTVIDNEMVYFEILDS 485
K+ KV++LG+SGVGK++++ +++ R+F +Y + + ++D+++V ++ D+
Sbjct: 5 KKHLLKVIILGESGVGKTSIMNQYVNRKFSKDYKATIGADFLTKEVLVDDKVVTLQLWDT 64
Query: 486 AGDAQEGEYANLENNIRWAEAFILMYPVTD 575
AG QE + R A+ +L+Y V +
Sbjct: 65 AG--QERFQSLGVAFYRGADCCVLVYDVNN 92
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 43.2 bits (97), Expect = 3e-05
Identities = 20/57 (35%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Frame = +3
Query: 324 KVMVLGQSGVGKSALVVRFITRRFIGEYDPNL-EKIYGFQTVIDNEMVYFEILDSAG 491
KV++LG SGVGK+ L+ +F+ ++F EY + V+D+++V ++ D+AG
Sbjct: 10 KVVILGDSGVGKTCLMNQFVNQKFSREYKATIGADFLTKDVVVDDKLVTLQLWDTAG 66
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 42.7 bits (96), Expect = 4e-05
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Frame = +3
Query: 324 KVMVLGQSGVGKSALVVRFITRRFIGEYDPNLEKIYGFQTV-IDNEMVYFEILDSAGDAQ 500
K++++G SGVGKS L++RF F + + + +T+ +D + + +I D+AG Q
Sbjct: 11 KLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAG--Q 68
Query: 501 EGEYANLENNIRWAEAFILMYPVTD 575
E R A +L+Y VTD
Sbjct: 69 ERFRTITTAYYRGAMGILLLYDVTD 93
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 42.3 bits (95), Expect = 5e-05
Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Frame = +3
Query: 321 FKVMVLGQSGVGKSALVVRFITRRFIGEYDPNLEKIYGFQT-VIDNEMVYFEILDSAGDA 497
FK +++G SGVGKS L++RF F E + + + V+DN+ + +I D+AG
Sbjct: 11 FKTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAG-- 68
Query: 498 QEGEYANLENNIRWAEAFILMYPVT 572
QE A R A +++Y +T
Sbjct: 69 QERYRAITSAYYRGAVGALIVYDIT 93
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 41.1 bits (92), Expect = 1e-04
Identities = 24/88 (27%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Frame = +3
Query: 315 KPFKVMVLGQSGVGKSALVVRFITRRFIGEYDPNLEKIYGFQTV-IDNEMVYFEILDSAG 491
+ FK++ LG+ VGK++L+ RF+ +F Y + + +T+ +++ V ++ D+AG
Sbjct: 10 RKFKLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 69
Query: 492 DAQEGEYANLENNIRWAEAFILMYPVTD 575
QE + + + IR + I++Y +T+
Sbjct: 70 --QERFRSLIPSYIRDSSVAIIVYDITN 95
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 41.1 bits (92), Expect = 1e-04
Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Frame = +3
Query: 324 KVMVLGQSGVGKSALVVRFITRRFIGEYDPNLEKIYGFQT--VIDNEMVYFEILDSAGDA 497
K+++LG S VGKS+LV+RF+ +F + + + QT + +N V EI D+AG
Sbjct: 16 KLVLLGDSAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTLPIDENTSVKLEIWDTAGQE 75
Query: 498 QEGEYANLENNIRWAEAFILMYPVT 572
+ A + R A I++Y +T
Sbjct: 76 RYKSLAPM--YYRNANCAIVVYDIT 98
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 37.1 bits (82), Expect = 0.002
Identities = 24/86 (27%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Frame = +3
Query: 309 KQKPF--KVMVLGQSGVGKSALVVRFITRRFIGEYDPNLEKIYGFQTVIDNEMVYFEILD 482
K+KP K+++LG GK++L+ F F Y+P + + Y +D + + D
Sbjct: 8 KKKPIYRKIVILGDGAAGKTSLLNVFTKGYFPQVYEPTIFENYIHDIFVDGNSIELSLWD 67
Query: 483 SAGDAQEGEYANLENNIRWAEAFILM 560
+AG QE EY L ++ +++ ++M
Sbjct: 68 TAG--QE-EYDQL-RSLSYSDTHVIM 89
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 31.9 bits (69), Expect = 0.069
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Frame = +3
Query: 324 KVMVLGQSGVGKSALVVRFITRRFIGEYDPNL-----EKIYGFQTVIDNEMVYFEILDSA 488
K+++ G SG GKS L+ RF+ ++ + + +I + + +I D+A
Sbjct: 11 KIVLAGPSGTGKSCLLQRFVKNQWDDQVSHTVGIDFASRIISVGMGNQQKRIKLQIWDTA 70
Query: 489 GDAQEGEYANLENNIRWAEAFILMYPVTD 575
G QE + N R A +L+Y VT+
Sbjct: 71 G--QEKFRSVARNYYRGAAGAVLVYDVTN 97
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 31.5 bits (68), Expect = 0.091
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Frame = +3
Query: 306 PKQKP-FKVMVLGQSGVGKSALVVRFITRRFIGEYDPNL-EKIYGFQTVIDNEMVYFEIL 479
P+ P FK++++G G GK+ V R +T F +Y L +++ + + F +
Sbjct: 4 PQNVPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVHPLHFHTNFGEICFNVW 63
Query: 480 DSAGDAQEG 506
D+AG + G
Sbjct: 64 DTAGQEKLG 72
>SPBC1198.05 |||guanylate kinase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 202
Score = 29.5 bits (63), Expect = 0.37
Identities = 17/35 (48%), Positives = 23/35 (65%)
Frame = +3
Query: 279 SSLAKLVLYPKQKPFKVMVLGQSGVGKSALVVRFI 383
SS+A ++ K KP V+V G SGVGKS L+ R +
Sbjct: 7 SSVASKLVTLKLKP--VVVFGPSGVGKSTLLKRLL 39
>SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 469
Score = 29.1 bits (62), Expect = 0.49
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +3
Query: 321 FKVMVLGQSGVGKSALVVRFITR 389
F V+VLG+SG GKS LV + R
Sbjct: 96 FNVLVLGESGSGKSTLVNTLLNR 118
>SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 515
Score = 26.6 bits (56), Expect = 2.6
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Frame = -3
Query: 272 RCTIIHRHNCRHNLFVSALLNRDHFYKAT--SQIAQSLV*HIFLFKKYSNKYCWAQKTHE 99
R + H + R F A+L F + SQ+ V +FL K+Y+ + +KT
Sbjct: 397 RIMMQHAMDLRSTEFAEAVLKESEFTLQSNRSQLLMDFVAILFLNKEYTKAFATLEKTFA 456
Query: 98 SLI 90
S I
Sbjct: 457 SKI 459
>SPAC637.07 |moe1||translation initiation factor eIF3d
Moe1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 567
Score = 26.2 bits (55), Expect = 3.4
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = +3
Query: 294 LVLYPKQKPFKVMVLGQ-SGVGKS-ALVVRFITRRFIGEYDPNLEKIYG 434
L L +KP K+MV + G K+ A V++I+ + + EYDP + G
Sbjct: 383 LSLETDEKPVKLMVRTEVDGYVKNPANDVQYISIKALNEYDPKFTNVTG 431
>SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 331
Score = 26.2 bits (55), Expect = 3.4
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +3
Query: 321 FKVMVLGQSGVGKSALV 371
F VMV+G SG GKS L+
Sbjct: 33 FNVMVVGPSGSGKSTLI 49
>SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 444
Score = 25.4 bits (53), Expect = 6.0
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = +2
Query: 347 RSWKICISCEIYNTTVHWR 403
R W + + E++ TVHWR
Sbjct: 134 RKWNVEAALEMFMKTVHWR 152
>SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 470
Score = 25.0 bits (52), Expect = 7.9
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 5/91 (5%)
Frame = +3
Query: 156 VLNQRLSYL*RGFIKMISIQQCRDK*IMATIMSMNNSTSPKSSLAK-LVLYPKQKPFK-- 326
VLN+ ++YL R F I ++ +++S S+L K L Y +K K
Sbjct: 211 VLNKWVTYL-RNFFPTIPMRSASGSGNSNLKHQSASASSTISNLLKSLKSYSAKKKLKSS 269
Query: 327 --VMVLGQSGVGKSALVVRFITRRFIGEYDP 413
V V+G VGKS+++ + R G P
Sbjct: 270 LTVGVIGYPNVGKSSVINALVNRSANGRSAP 300
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,516,478
Number of Sequences: 5004
Number of extensions: 53495
Number of successful extensions: 149
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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