Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_B10
         (394 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    28   0.59 
SPAC1834.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   1.8  
SPAC13G7.12c |||choline kinase |Schizosaccharomyces pombe|chr 1|...    26   2.4  
SPCC622.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         25   5.5  

>SPAC18G6.05c |||translation elongation regulator Gcn1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 27.9 bits (59), Expect = 0.59
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -3

Query: 80  VVYMIYHGFGDSKTVVRDLILYSVLT 3
           ++  + HGF DSK     LIL SVLT
Sbjct: 297 ILSSLAHGFADSKVDASSLILSSVLT 322


>SPAC1834.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 178

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -2

Query: 279 NILNIITFNTIHKTRLLQYFLN 214
           N+L++ TFN + K RL QY L+
Sbjct: 102 NVLSLNTFNILGKKRLSQYTLD 123


>SPAC13G7.12c |||choline kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 8/43 (18%), Positives = 22/43 (51%)
 Frame = -3

Query: 149 FLLDLYIRAHVFIRNKCSYQNHYVVYMIYHGFGDSKTVVRDLI 21
           ++ D +   H ++ ++  Y +     ++YH + +   V+ DL+
Sbjct: 293 WMADYHHPTHNYLMDRSRYPDFNARKLVYHAYVEQSAVINDLL 335


>SPCC622.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 140

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 19/64 (29%), Positives = 32/64 (50%)
 Frame = +2

Query: 62  DKSYKQRSDFDKSIYYV*IHVLGYINLIKTIFVSSVVDVKSVIESAAALLLFKKYCNNRV 241
           D +Y++ SD    ++     +L Y+ L   IF + VVDVK   E  +  LLF  +    +
Sbjct: 13  DFTYRECSDVANDVFKKTQWLL-YVFLF-IIFANCVVDVKYYFEGFSHSLLFVYFFLTLI 70

Query: 242 LCIV 253
           + +V
Sbjct: 71  ILLV 74


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,595,129
Number of Sequences: 5004
Number of extensions: 29659
Number of successful extensions: 86
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 130061696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)