Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_B10
         (394 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0921 + 7104923-7105396,7106624-7106768,7107078-7107121           29   1.8  
01_06_0300 + 28312590-28313939                                         28   3.1  
04_01_0476 + 6215401-6217445,6217538-6217630,6218031-6218133,621...    27   4.1  
06_01_0077 + 626126-626137,626222-627421                               26   9.4  
05_02_0152 + 7126802-7127315,7127451-7129190,7130718-7131778           26   9.4  

>06_01_0921 + 7104923-7105396,7106624-7106768,7107078-7107121
          Length = 220

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
 Frame = -3

Query: 164 SKRILFLLDLYIRAHVFIRNKCSYQNHYVVYMIYHGFGD---SKTVVRDL 24
           S+ I+F + +  R  V +RN  SY  H+    I  G G+   SKT  RDL
Sbjct: 170 SECIIFRVSVS-RYQVTVRNHQSYSGHFTEVKIVSGLGNAVGSKTSARDL 218


>01_06_0300 + 28312590-28313939
          Length = 449

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 11/46 (23%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = -3

Query: 158 RILFLLDLYIRAHVFIRNKCSYQN-HYVVYMIYHGFGDSKTVVRDL 24
           R+ F+ +L+      +    S+ + H++ Y++Y G  +S T++  L
Sbjct: 109 RVTFVCELHAAEENLVVLSASFDHAHHIYYLVYDGIDESLTMIPSL 154


>04_01_0476 +
           6215401-6217445,6217538-6217630,6218031-6218133,
           6218237-6218254
          Length = 752

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 116 FIRNKCSYQNHYVVYMIYHGFGDS 45
           FIR   + ++HYVV+ + H F +S
Sbjct: 522 FIRKVANIEDHYVVHDLLHDFAES 545


>06_01_0077 + 626126-626137,626222-627421
          Length = 403

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = -3

Query: 110 RNKCSYQNHYVVYMIYHGFGDSKTVVRD 27
           R+ C Y  HY   +  HG GD    V D
Sbjct: 342 RSNCLYYAHYSQPLSLHGLGDDADAVWD 369


>05_02_0152 + 7126802-7127315,7127451-7129190,7130718-7131778
          Length = 1104

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +2

Query: 128 GYINLIKTIFVSSVVDVKSVIESAAALLLFKKYCNNRVL 244
           G   L  T+ +SS+ +VKS  E+  A L+ K+Y    VL
Sbjct: 694 GMNQLSGTLTISSIYNVKSKEEAVEARLIDKQYLQALVL 732


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,167,991
Number of Sequences: 37544
Number of extensions: 151259
Number of successful extensions: 334
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 334
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 672845152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)