Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_B10
         (394 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74473-2|CAA98949.2|  319|Caenorhabditis elegans Hypothetical pr...    31   0.29 
Z83234-2|CAB70170.2|  715|Caenorhabditis elegans Hypothetical pr...    30   0.51 
U40933-4|AAA81674.1|  778|Caenorhabditis elegans Caenorhabditis ...    29   1.6  
Z83233-5|CAB05765.2|  340|Caenorhabditis elegans Hypothetical pr...    28   2.7  
U80024-6|AAW88410.1|  300|Caenorhabditis elegans Serpentine rece...    27   6.3  
AF125459-8|AAD12840.2|  317|Caenorhabditis elegans Serpentine re...    27   6.3  
U40954-3|AAL00885.1|  171|Caenorhabditis elegans Hypothetical pr...    26   8.4  
AF047657-1|AAK18951.1|  328|Caenorhabditis elegans Serpentine re...    26   8.4  

>Z74473-2|CAA98949.2|  319|Caenorhabditis elegans Hypothetical
           protein F56H9.1 protein.
          Length = 319

 Score = 31.1 bits (67), Expect = 0.29
 Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
 Frame = +2

Query: 155 FVSSVVDVKSVIESAAALLLFKKYCNNRVLCIVLKVIMFNILSIGL--FVTIIMNVKAYP 328
           FV SV+            ++   YC+   LCI L +  F +L  G+   V  I N K++ 
Sbjct: 235 FVQSVIQDYVCSMDVVNNMVSHFYCSGDRLCITLSLFSFGVLIYGIDGLVMYIFNYKSFG 294

Query: 329 SIFSGESVENE 361
           S  +     NE
Sbjct: 295 SSVASREPTNE 305


>Z83234-2|CAB70170.2|  715|Caenorhabditis elegans Hypothetical
           protein K09E4.4 protein.
          Length = 715

 Score = 30.3 bits (65), Expect = 0.51
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -3

Query: 152 LFLLDLYIRAHVFIRNKCSYQNHYVVYMIYHGFGDSK 42
           L +LDLY       +   S+Q H+ V+ + H FG S+
Sbjct: 387 LLILDLYAEVVPAWQMTSSFQGHHFVWCLLHNFGGSR 423


>U40933-4|AAA81674.1|  778|Caenorhabditis elegans Caenorhabditis
           zeste white 10 (drosophila) homolog protein 1 protein.
          Length = 778

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = -3

Query: 107 NKCSYQNHYVVYMIYHGFGDS-KTVVRDLILYSVL 6
           N C Y +H ++ M +   GD+ KT++  L+L SV+
Sbjct: 529 NNCHYISHCIMTMSFEASGDNQKTLLEPLLLDSVI 563


>Z83233-5|CAB05765.2|  340|Caenorhabditis elegans Hypothetical
           protein K06B4.5 protein.
          Length = 340

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = +1

Query: 133 YKSNKNNIRFECR*CQKCYRVSSCP 207
           Y+S+KNN+ ++CR   +C++  + P
Sbjct: 20  YRSSKNNLIYKCRNINQCFQNYNSP 44


>U80024-6|AAW88410.1|  300|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 8 protein.
          Length = 300

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 15/51 (29%), Positives = 29/51 (56%)
 Frame = +2

Query: 158 VSSVVDVKSVIESAAALLLFKKYCNNRVLCIVLKVIMFNILSIGLFVTIIM 310
           + +VV +   +E   A+     + N+R LC  + ++MF+I  +GLF  +I+
Sbjct: 100 IRTVVALAISLERVLAIYTPIMFHNHRHLCPSILILMFSIF-MGLFENLIL 149


>AF125459-8|AAD12840.2|  317|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 21 protein.
          Length = 317

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = -2

Query: 276 ILNIITFNTIHKTRLLQYFLNNS 208
           ILN++  NTI K++  +++ NNS
Sbjct: 44  ILNVLILNTIFKSKNKEHYRNNS 66


>U40954-3|AAL00885.1|  171|Caenorhabditis elegans Hypothetical
           protein ZK813.4a protein.
          Length = 171

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = -2

Query: 387 TKGKSYDGTSFSTDSPEKIDGYAFTFIIIVTNNPIDNILNIITFNTIHK 241
           T G+SY  TSFST    +       +I ++  + I   L ++T   +HK
Sbjct: 90  TTGESYGSTSFSTFQNHRTIKRNIIWIEVMEGD-IAQTLGLVTVGDVHK 137


>AF047657-1|AAK18951.1|  328|Caenorhabditis elegans Serpentine
           receptor, class j protein54 protein.
          Length = 328

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 11/43 (25%), Positives = 20/43 (46%)
 Frame = -2

Query: 351 TDSPEKIDGYAFTFIIIVTNNPIDNILNIITFNTIHKTRLLQY 223
           T++P K   Y F  +     N I +I+N++    +H  R   +
Sbjct: 31  TENPTKFGNYRFLLLYFALFNLIFSIMNVVVPLDLHSYRYCSF 73


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,609,160
Number of Sequences: 27780
Number of extensions: 159511
Number of successful extensions: 453
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 453
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 598330768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)