Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_B09
(528 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7724| Best HMM Match : ATP-synt_ab_C (HMM E-Value=0) 157 5e-39
SB_55653| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_24994| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_12626| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_41501| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
SB_16304| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
SB_5567| Best HMM Match : Ion_trans_2 (HMM E-Value=4.9e-09) 28 5.5
SB_44024| Best HMM Match : Flavin_Reduct (HMM E-Value=0.79) 27 7.2
SB_11978| Best HMM Match : Myb_DNA-binding (HMM E-Value=8e-21) 27 7.2
SB_12902| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.2
SB_19375| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
>SB_7724| Best HMM Match : ATP-synt_ab_C (HMM E-Value=0)
Length = 448
Score = 157 bits (381), Expect = 5e-39
Identities = 72/88 (81%), Positives = 81/88 (92%)
Frame = +1
Query: 235 FEDNLPPILNALEVQNRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQPVHDSGSPIRI 414
F+++LPPILNALEV+NR+PRL+LEVAQHLGENTVRTIAMDGTEGL+RGQ D+G PI I
Sbjct: 88 FDEDLPPILNALEVENRTPRLILEVAQHLGENTVRTIAMDGTEGLIRGQKCVDTGGPITI 147
Query: 415 PVGAETLGRIINVIGEPIDERGPIPTDK 498
PVG ETLGRIINVIGEPIDERGP+ TDK
Sbjct: 148 PVGPETLGRIINVIGEPIDERGPVETDK 175
>SB_55653| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 390
Score = 43.6 bits (98), Expect = 1e-04
Identities = 18/48 (37%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Frame = +1
Query: 343 IAMDGTEGLVR-GQPVHDSGSPIRIPVGAETLGRIINVIGEPIDERGP 483
+ + G + L++ G V +G+ + +PVG E LGR+++ +G PID +GP
Sbjct: 12 VVVFGNDRLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNPIDGKGP 59
>SB_24994| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1122
Score = 29.5 bits (63), Expect = 1.8
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = +1
Query: 376 GQPVHDSGSPIRIPVGAETL--GRIINVIGEPIDERGP 483
GQP +D+G P G + G+++N GEP++ GP
Sbjct: 94 GQPANDTGQPSS-NAGQPLINTGQLVNNTGEPVNNTGP 130
>SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1554
Score = 28.7 bits (61), Expect = 3.1
Identities = 19/54 (35%), Positives = 21/54 (38%)
Frame = -2
Query: 482 GPRSSIGSPMTLMIRPRVSAPTGIRMGEPESCTGCPRTKPSVPSMAMVRTVFSP 321
GP SS+ P T P PTG+ M P S P P P M SP
Sbjct: 684 GPPSSMSGPTTSRHGP---PPTGLTMNPPTSMGMAPMMPPPGPGMGTHPQQVSP 734
>SB_12626| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 363
Score = 28.7 bits (61), Expect = 3.1
Identities = 16/32 (50%), Positives = 18/32 (56%)
Frame = +1
Query: 397 GSPIRIPVGAETLGRIINVIGEPIDERGPIPT 492
G PI P+G +GR I IG PI GPI T
Sbjct: 283 GRPIGRPIGL--IGRPIGPIGRPIGPIGPIGT 312
>SB_41501| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 748
Score = 27.9 bits (59), Expect = 5.5
Identities = 10/45 (22%), Positives = 23/45 (51%)
Frame = +2
Query: 323 VKIRSEPLPWTVPRV*CADNPYMTLVHPSVSP*EPRLWAVSSMSS 457
V R +P W + +V P + ++ + +PR+WA+ +++
Sbjct: 154 VTTRQQPRVWAIDQVTTRQQPRVWVIDQVTTRQQPRVWAIDQVTT 198
Score = 27.1 bits (57), Expect = 9.6
Identities = 10/45 (22%), Positives = 22/45 (48%)
Frame = +2
Query: 323 VKIRSEPLPWTVPRV*CADNPYMTLVHPSVSP*EPRLWAVSSMSS 457
V R +P W + +V P + + + +PR+WA+ +++
Sbjct: 42 VTTRQQPRVWAIDQVTTRQQPRVWAIDQVTTRQQPRVWAIDQVTT 86
Score = 27.1 bits (57), Expect = 9.6
Identities = 10/45 (22%), Positives = 22/45 (48%)
Frame = +2
Query: 323 VKIRSEPLPWTVPRV*CADNPYMTLVHPSVSP*EPRLWAVSSMSS 457
V R +P W + +V P + + + +PR+WA+ +++
Sbjct: 56 VTTRQQPRVWAIDQVTTRQQPRVWAIDQVTTRQQPRVWAIDQVTT 100
Score = 27.1 bits (57), Expect = 9.6
Identities = 10/45 (22%), Positives = 22/45 (48%)
Frame = +2
Query: 323 VKIRSEPLPWTVPRV*CADNPYMTLVHPSVSP*EPRLWAVSSMSS 457
V R +P W + +V P + + + +PR+WA+ +++
Sbjct: 70 VTTRQQPRVWAIDQVTTRQQPRVWAIDQVTTRQQPRVWAIDQVTT 114
Score = 27.1 bits (57), Expect = 9.6
Identities = 10/45 (22%), Positives = 23/45 (51%)
Frame = +2
Query: 323 VKIRSEPLPWTVPRV*CADNPYMTLVHPSVSP*EPRLWAVSSMSS 457
V R +P W++ +V P + + + +PR+WA+ +++
Sbjct: 126 VTTRQQPRVWSIDQVTTRQQPRVWSIDQVTTRQQPRVWAIDQVTT 170
>SB_16304| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1489
Score = 27.9 bits (59), Expect = 5.5
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -3
Query: 103 SATVLAAKKPLPTRLTAPNIFQ*SAGLMCGI 11
+A +A KKP+P + P+I Q S+ M GI
Sbjct: 512 AAQDIAGKKPIPIQPKTPSIVQGSSSTMTGI 542
>SB_5567| Best HMM Match : Ion_trans_2 (HMM E-Value=4.9e-09)
Length = 348
Score = 27.9 bits (59), Expect = 5.5
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = -1
Query: 384 GLSA-H*TLGTVHGNGSDRIFTQVLRDLQYETRGAIL 277
G SA H T GT GN SDR Q L D + +R ++
Sbjct: 285 GASAGHGTEGTERGNDSDRFEMQTLEDEEENSRTRVM 321
>SB_44024| Best HMM Match : Flavin_Reduct (HMM E-Value=0.79)
Length = 308
Score = 27.5 bits (58), Expect = 7.2
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = -2
Query: 461 SPMTLMIRPRV-SAPTGIRMGEPESCTG 381
S +T +P SAPTGI G+P S TG
Sbjct: 112 STLTAFGQPSTTSAPTGISFGQPTSSTG 139
>SB_11978| Best HMM Match : Myb_DNA-binding (HMM E-Value=8e-21)
Length = 636
Score = 27.5 bits (58), Expect = 7.2
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = +1
Query: 235 FEDNLPPILNALEVQNRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQPVHDSG 399
F++++ P+LN L + +S L L ++ G N V +GT + + H G
Sbjct: 174 FQESVCPVLNTLTLHIKSSELDLNRPRNRGSNKVENGKNEGTAMETKDKVEHVPG 228
>SB_12902| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1585
Score = 27.5 bits (58), Expect = 7.2
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -3
Query: 430 SRLLRGYGWVNQSHVRVVRALNPRYRPWQWFGPYFHPSA 314
S+ + G+G S VRV +P PW+ F P F P A
Sbjct: 421 SKRVVGFGCCTLSTVRVTE-FSPLVSPWKPFQPEFSPYA 458
>SB_19375| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 82
Score = 27.1 bits (57), Expect = 9.6
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -1
Query: 258 NGRQVVFELYINHSTDNCNHLTLGFRLQLLPH 163
+ R+VV Y NH D C L GF+L L H
Sbjct: 22 DARRVVLRKY-NHLDDPCEVLRAGFKLGKLKH 52
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,906,226
Number of Sequences: 59808
Number of extensions: 402852
Number of successful extensions: 1170
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1170
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1197191618
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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