Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_B09
(528 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U10402-2|AAA19068.2| 538|Caenorhabditis elegans Atp synthase su... 148 2e-36
AL023815-4|CAF31480.1| 511|Caenorhabditis elegans Hypothetical ... 44 7e-05
AL023815-1|CAA19429.1| 538|Caenorhabditis elegans Hypothetical ... 44 7e-05
U41015-2|AAA82311.1| 491|Caenorhabditis elegans Vacuolar h atpa... 36 0.018
AC006708-2|AAF60418.1| 501|Caenorhabditis elegans Temporarily a... 33 0.17
L15188-11|AAA27954.4| 1226|Caenorhabditis elegans Hypothetical p... 30 1.2
AL033512-1|CAA22076.1| 606|Caenorhabditis elegans Hypothetical ... 29 2.1
AY519856-1|AAR89637.1| 1440|Caenorhabditis elegans nematode poly... 28 3.6
AF106581-2|AAR25643.1| 1198|Caenorhabditis elegans Nematode poly... 28 3.6
AF106581-1|AAC78208.1| 1440|Caenorhabditis elegans Nematode poly... 28 3.6
AF017746-1|AAD01632.1| 1198|Caenorhabditis elegans ladder protei... 28 3.6
U64600-4|AAK39201.1| 299|Caenorhabditis elegans C.elegans homeo... 28 4.8
AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical ... 28 4.8
Z81128-4|CAB03403.1| 898|Caenorhabditis elegans Hypothetical pr... 27 6.3
U42830-4|AAC48277.1| 487|Caenorhabditis elegans Neuronal igcam ... 27 8.3
>U10402-2|AAA19068.2| 538|Caenorhabditis elegans Atp synthase
subunit protein 2 protein.
Length = 538
Score = 148 bits (359), Expect = 2e-36
Identities = 68/84 (80%), Positives = 76/84 (90%)
Frame = +1
Query: 235 FEDNLPPILNALEVQNRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQPVHDSGSPIRI 414
F++NLPPILN LEV RSPRL+LEV+QHLG+N VR IAMDGTEGLVRGQPV D+G PI+I
Sbjct: 84 FDENLPPILNGLEVVGRSPRLILEVSQHLGDNVVRCIAMDGTEGLVRGQPVADTGDPIKI 143
Query: 415 PVGAETLGRIINVIGEPIDERGPI 486
PVG ETLGRI+NVIGEPIDERGPI
Sbjct: 144 PVGPETLGRIMNVIGEPIDERGPI 167
>AL023815-4|CAF31480.1| 511|Caenorhabditis elegans Hypothetical
protein H28O16.1d protein.
Length = 511
Score = 44.0 bits (99), Expect = 7e-05
Identities = 20/66 (30%), Positives = 36/66 (54%)
Frame = +1
Query: 307 VAQHLGENTVRTIAMDGTEGLVRGQPVHDSGSPIRIPVGAETLGRIINVIGEPIDERGPI 486
+A +L + V + + + G V +G+ + +PVG LGR+++ +G PID +GPI
Sbjct: 63 MAMNLDVDNVGVVVFGNDKVIREGDIVKRTGAIVDVPVGDGLLGRVVDALGNPIDGKGPI 122
Query: 487 PTDKTS 504
+ S
Sbjct: 123 ANARRS 128
>AL023815-1|CAA19429.1| 538|Caenorhabditis elegans Hypothetical
protein H28O16.1a protein.
Length = 538
Score = 44.0 bits (99), Expect = 7e-05
Identities = 20/66 (30%), Positives = 36/66 (54%)
Frame = +1
Query: 307 VAQHLGENTVRTIAMDGTEGLVRGQPVHDSGSPIRIPVGAETLGRIINVIGEPIDERGPI 486
+A +L + V + + + G V +G+ + +PVG LGR+++ +G PID +GPI
Sbjct: 90 MAMNLDVDNVGVVVFGNDKVIREGDIVKRTGAIVDVPVGDGLLGRVVDALGNPIDGKGPI 149
Query: 487 PTDKTS 504
+ S
Sbjct: 150 ANARRS 155
>U41015-2|AAA82311.1| 491|Caenorhabditis elegans Vacuolar h atpase
protein 12 protein.
Length = 491
Score = 35.9 bits (79), Expect = 0.018
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +1
Query: 319 LGENTVRTIAMDGTEGLVRGQPVHD-SGSPIRIPVGAETLGRIINVIGEPIDERGPI 486
+ +N +GT G+ + + +G +R PV + LGRI N G+PID+ P+
Sbjct: 71 ISKNKAVVQVFEGTSGIDAKNTICEFTGDILRTPVSEDMLGRIFNGSGKPIDKGPPV 127
>AC006708-2|AAF60418.1| 501|Caenorhabditis elegans Temporarily
assigned gene nameprotein 300 protein.
Length = 501
Score = 32.7 bits (71), Expect = 0.17
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = +1
Query: 352 DGTEGL-VRGQPVHDSGSPIRIPVGAETLGRIINVIGEPIDERGPI-PTD 495
+GT G+ + +G R PV + LGRI N G+PID+ P+ P D
Sbjct: 94 EGTTGVDAKFTTCEFTGDIFRSPVSLDMLGRIFNGSGKPIDKGPPVLPED 143
>L15188-11|AAA27954.4| 1226|Caenorhabditis elegans Hypothetical
protein C14B9.8 protein.
Length = 1226
Score = 29.9 bits (64), Expect = 1.2
Identities = 12/43 (27%), Positives = 26/43 (60%)
Frame = +3
Query: 45 MLGAVSRVGSGFLAAKTVAEKTFTECGKIAAVSSVNKRDYAAK 173
++GA+ ++ +G+L+ V K ++ + AVS + RD +A+
Sbjct: 599 VIGAIKKINTGYLSGARVVMKDLSDFFRTTAVSKMEFRDKSAE 641
>AL033512-1|CAA22076.1| 606|Caenorhabditis elegans Hypothetical
protein Y49A3A.2 protein.
Length = 606
Score = 29.1 bits (62), Expect = 2.1
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +1
Query: 358 TEGLVRGQPVHDSGSPIRIPVGAETLGRIINVIGEPIDE 474
T G+ G PV +G P+ + +G +G I + I P+ +
Sbjct: 59 TSGVTIGDPVLRTGKPLSVELGPGIMGSIFDGIQRPLKD 97
>AY519856-1|AAR89637.1| 1440|Caenorhabditis elegans nematode
polyprotein allergen related,post-translationnally
cleaved, the diverse 14.5 kDa cleavageproducts bind
lipids and retinol (164.6 kD) protein.
Length = 1440
Score = 28.3 bits (60), Expect = 3.6
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +3
Query: 90 KTVAEKTFTECGKIAAVSSVNKRDYAAK 173
KT+AEK F CG++ S ++RD AAK
Sbjct: 997 KTIAEKMFGICGEVYK-ESKSRRDVAAK 1023
>AF106581-2|AAR25643.1| 1198|Caenorhabditis elegans Nematode
polyprotein allergen relatedprotein 1, isoform c
protein.
Length = 1198
Score = 28.3 bits (60), Expect = 3.6
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +3
Query: 90 KTVAEKTFTECGKIAAVSSVNKRDYAAK 173
KT+AEK F CG++ S ++RD AAK
Sbjct: 755 KTIAEKMFGICGEVYK-ESKSRRDVAAK 781
>AF106581-1|AAC78208.1| 1440|Caenorhabditis elegans Nematode
polyprotein allergen relatedprotein 1, isoform a protein.
Length = 1440
Score = 28.3 bits (60), Expect = 3.6
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +3
Query: 90 KTVAEKTFTECGKIAAVSSVNKRDYAAK 173
KT+AEK F CG++ S ++RD AAK
Sbjct: 997 KTIAEKMFGICGEVYK-ESKSRRDVAAK 1023
>AF017746-1|AAD01632.1| 1198|Caenorhabditis elegans ladder protein
protein.
Length = 1198
Score = 28.3 bits (60), Expect = 3.6
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +3
Query: 90 KTVAEKTFTECGKIAAVSSVNKRDYAAK 173
KT+AEK F CG++ S ++RD AAK
Sbjct: 752 KTIAEKMFGICGEVYK-ESKSRRDVAAK 778
>U64600-4|AAK39201.1| 299|Caenorhabditis elegans C.elegans homeobox
protein 30 protein.
Length = 299
Score = 27.9 bits (59), Expect = 4.8
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = -2
Query: 437 PRVSAPTGIRMGEPESC 387
PR S+P G RMG P SC
Sbjct: 138 PRASSPGGDRMGSPGSC 154
>AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical
protein W03G1.5 protein.
Length = 471
Score = 27.9 bits (59), Expect = 4.8
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 303 GGRAALG*KYGPNHCHGRYRGFSART 380
GGR G ++GP HC GR+ +R+
Sbjct: 348 GGRHGHGGRHGPPHCPGRHGRHGSRS 373
>Z81128-4|CAB03403.1| 898|Caenorhabditis elegans Hypothetical
protein T23D8.4 protein.
Length = 898
Score = 27.5 bits (58), Expect = 6.3
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -1
Query: 270 ESI*NGRQVVFELYINHSTDNCNHLTLGFRLQLLPHSPSC 151
E I RQV + ++IN C +L L+ +PH SC
Sbjct: 620 EKIDRSRQVPYHMHINVELMECVYLICSMLLE-IPHMASC 658
>U42830-4|AAC48277.1| 487|Caenorhabditis elegans Neuronal igcam
protein 3 protein.
Length = 487
Score = 27.1 bits (57), Expect = 8.3
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +1
Query: 352 DGTEGLVRGQPVH-DSGSPIRIPVGAETLGRIINVIGEPIDE 474
D +G + G+P+ D G ++ P G E + ++ N GEP+DE
Sbjct: 152 DTVKGALLGEPITIDCG--VKGPSGKEPMIQMTNGNGEPLDE 191
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,888,224
Number of Sequences: 27780
Number of extensions: 288928
Number of successful extensions: 809
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 809
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1038911524
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -