Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_B08
         (214 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat protein|Schizo...    27   0.34 
SPCC1795.02c ||SPCC895.01|CaCA proton/calcium exchanger|Schizosa...    25   1.0  
SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    24   2.4  
SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe...    24   3.1  
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S...    24   3.1  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    24   3.1  
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    23   4.2  
SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces pomb...    23   5.5  
SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual      23   5.5  
SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145 |Schizo...    23   5.5  
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    23   5.5  
SPCC4B3.12 |set9||histone lysine methyltransferase Set9|Schizosa...    22   9.6  
SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb...    22   9.6  
SPBC887.15c |||sphingosine hydroxylase |Schizosaccharomyces pomb...    22   9.6  
SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster...    22   9.6  

>SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 509

 Score = 27.1 bits (57), Expect = 0.34
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -1

Query: 181 LFRMYQIYNASESGWGKSLATTARIHASATY 89
           L +++ I +A+  GWG+ L T   IH    Y
Sbjct: 413 LTKVFDIPSAAIDGWGQDLRTIMAIHTHRKY 443


>SPCC1795.02c ||SPCC895.01|CaCA proton/calcium
           exchanger|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 412

 Score = 25.4 bits (53), Expect = 1.0
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 186 VFCFVCIKFITHLRADGASHW 124
           V  FV +  + +L  DGA+HW
Sbjct: 370 VILFVSVFLVNYLIQDGATHW 390


>SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 390

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = +3

Query: 39  LCKRK*NTEMMAPSCALYVALACILAVVASDLPHP 143
           +C R      + P CAL ++  CI     + +P P
Sbjct: 240 VCIRSKEKMFLNPDCALTLSFICIFLAQYTSIPLP 274


>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 273

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -1

Query: 139 WGKSLATTARIHASATYRAHEGAIISVFYFLL 44
           W + ++T A IH + T    +G  I    FL+
Sbjct: 67  WFRDMSTEANIHGAHTKAVTKGLKIGFMLFLI 98


>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
           Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = +1

Query: 127 VTCPIRSQMRYKFDTYETKHMESW-PELPD 213
           VT PI S     ++   +K  ESW P+L D
Sbjct: 79  VTAPIASTHESNYEESVSKFKESWLPQLKD 108


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -1

Query: 106  HASATYRAHEGAIISVFYFLLQSRSVNK 23
            HAS T++A++  +    Y   + +S+NK
Sbjct: 1653 HASPTFKAYQFVVRICHYLTSKVKSINK 1680


>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
           Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -3

Query: 116 SENTRERDVQSTRRSHHFSILFSFTESI 33
           S+ +R RD+++   S+ FS++ S T  I
Sbjct: 353 SKRSRGRDLRTPSESNLFSLIASITSDI 380


>SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 600

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -3

Query: 110 NTRERDVQSTRRSHHFSIL 54
           NT +R    + RSHHFSIL
Sbjct: 328 NTHQRQ---SERSHHFSIL 343


>SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 324

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 130 SLATTARIHASATYRAHEGAIISVFYFLL 44
           SL+T A + AS    +     I+VF+F+L
Sbjct: 204 SLSTNAALSASVVLASRLEKSINVFFFIL 232


>SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 5/29 (17%)
 Frame = -2

Query: 162 FITHLRADGAS-----HWPQQREYTRARR 91
           F+THL+A   +     HW Q+R+Y   +R
Sbjct: 214 FLTHLKAYPNTVPVPRHWNQKRDYLSGQR 242


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = -1

Query: 151  SESGWGKSLATTARIHASATYRAH 80
            S+ GW   LA   R H    +R H
Sbjct: 978  SDRGWDSLLACLVRDHVVKVFRRH 1001


>SPCC4B3.12 |set9||histone lysine methyltransferase
           Set9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 441

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = +1

Query: 88  CTSRSRVFSLLWPVTCPIRSQMR 156
           C   S++FSL WP    +  +++
Sbjct: 387 CIRHSKLFSLPWPCRHKVNRELK 409


>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +2

Query: 143 ALRCVINLIHTKQNTWK 193
           A+  +I  +HT  NTW+
Sbjct: 163 AIENIIKDLHTSDNTWR 179


>SPBC887.15c |||sphingosine hydroxylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 293

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -2

Query: 72  PSFQYFIFFYRVD 34
           P+FQYF  F+ +D
Sbjct: 130 PAFQYFFAFFIID 142


>SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 419

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = +3

Query: 75  PSCALYVALACILAV 119
           P+ A+++A AC+LAV
Sbjct: 356 PTPAIHIARACLLAV 370


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 895,688
Number of Sequences: 5004
Number of extensions: 14580
Number of successful extensions: 36
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 2,362,478
effective HSP length: 50
effective length of database: 2,112,278
effective search space used: 42245560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)