Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_B08
(214 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0026 + 25738960-25739075,25740385-25740733,25740825-25741511 28 0.89
09_03_0177 - 13120816-13120941,13121032-13121137,13121231-131213... 27 1.6
07_01_0636 + 4761858-4762421,4763596-4763819,4763961-4764309,476... 27 1.6
11_06_0340 - 22500411-22500566,22500660-22500783,22500914-225010... 26 3.6
08_02_0178 - 13853847-13854416 26 4.8
04_04_1219 + 31835854-31836105,31836481-31837152 26 4.8
07_01_0326 + 2285964-2286431 25 6.3
03_06_0398 + 33629421-33629633,33629960-33630063,33630140-336301... 25 6.3
03_05_0710 + 27038709-27038865,27039205-27039346,27039383-270395... 25 8.3
02_04_0042 + 19182251-19182562,19182626-19182853 25 8.3
>01_06_0026 + 25738960-25739075,25740385-25740733,25740825-25741511
Length = 383
Score = 28.3 bits (60), Expect = 0.89
Identities = 14/52 (26%), Positives = 23/52 (44%)
Frame = +3
Query: 3 RLSYASSLLTDRLCKRK*NTEMMAPSCALYVALACILAVVASDLPHPLSDAL 158
R+SY + R C E+ +P + C+ ++A + PLSD L
Sbjct: 258 RMSYIQHMKNSRFCLCPMGYEVNSPRIVEALYYECVPVIIADNFVLPLSDVL 309
>09_03_0177 -
13120816-13120941,13121032-13121137,13121231-13121305,
13121385-13121461,13122462-13122549,13122638-13122699,
13122807-13122863,13122960-13123049,13123186-13123251,
13123530-13123619,13123711-13123804,13123915-13124213
Length = 409
Score = 27.5 bits (58), Expect = 1.6
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = +3
Query: 96 ALACILAVVASDLPHPLSDAL 158
ALA +LAV ++ P PLSDAL
Sbjct: 32 ALASLLAVSSAQAPAPLSDAL 52
>07_01_0636 +
4761858-4762421,4763596-4763819,4763961-4764309,
4764648-4765331
Length = 606
Score = 27.5 bits (58), Expect = 1.6
Identities = 13/51 (25%), Positives = 21/51 (41%)
Frame = +3
Query: 6 LSYASSLLTDRLCKRK*NTEMMAPSCALYVALACILAVVASDLPHPLSDAL 158
+SY + R C E+ +P + L C+ V+ D P +D L
Sbjct: 479 MSYTDMMRRSRFCLCPSGYEVASPRVVEAIYLECVPVVIGDDYTLPFADVL 529
>11_06_0340 -
22500411-22500566,22500660-22500783,22500914-22501080,
22501157-22501336,22501544-22502427,22502728-22502843,
22503745-22504217
Length = 699
Score = 26.2 bits (55), Expect = 3.6
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = -2
Query: 153 HLRADGASHWPQQREYT-RARRTEHTKEPSFQYFIFFYRVDRLIN 22
+LR ++ Q T R +H ++P+FQ F YR RL++
Sbjct: 515 YLRDSMGTYLSQPNPVTSRWEGEDHLRDPNFQLDAFRYRTSRLLH 559
>08_02_0178 - 13853847-13854416
Length = 189
Score = 25.8 bits (54), Expect = 4.8
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -2
Query: 120 QQREYTRARRTEHTKEPSFQYFI 52
QQ+ Y ARRT+ T P QY +
Sbjct: 119 QQQAYKAARRTKATTAPILQYSV 141
>04_04_1219 + 31835854-31836105,31836481-31837152
Length = 307
Score = 25.8 bits (54), Expect = 4.8
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = -1
Query: 202 PASFPCVLFRMYQIYNASESGWGKSLATTARIHASA 95
PA+F +L +Y + ++SG+GK A R+ +A
Sbjct: 188 PATFKALLHFIYTDHLPNDSGFGKDAAMQRRLLVAA 223
>07_01_0326 + 2285964-2286431
Length = 155
Score = 25.4 bits (53), Expect = 6.3
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +2
Query: 104 VYSRCCGQ*LAPSAL 148
++ RCCGQ L+P A+
Sbjct: 64 IFGRCCGQQLSPRAI 78
>03_06_0398 +
33629421-33629633,33629960-33630063,33630140-33630194,
33630293-33630341,33630427-33630599,33630731-33630808,
33630923-33630985,33631400-33631525,33631667-33631795
Length = 329
Score = 25.4 bits (53), Expect = 6.3
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -2
Query: 156 THLRADGASHWPQQREYTRARRTEHTKE 73
THLR D A +RE R RR + +E
Sbjct: 187 THLRRDKALSQMDERELKRERRKQSNRE 214
>03_05_0710 +
27038709-27038865,27039205-27039346,27039383-27039558,
27039639-27039703,27040000-27040371,27040429-27040504,
27040505-27040571,27040672-27040825,27041122-27041289,
27041392-27041502,27041612-27041722,27041864-27041881,
27041917-27042018,27042587-27042817,27043390-27043464,
27043744-27043815,27044597-27044782,27044868-27045026,
27045251-27045343,27045730-27045801,27046336-27046426,
27046669-27046847,27047252-27047333,27047526-27047636,
27047715-27047821,27048194-27048271,27048357-27048452,
27048627-27048722,27048839-27048856
Length = 1154
Score = 25.0 bits (52), Expect = 8.3
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -2
Query: 123 PQQREYTRARRTEHTKEPSFQYFIFF 46
PQ+R + ++ R+ E SFQ F FF
Sbjct: 601 PQERLHLKSLRSSVDAEDSFQDFTFF 626
>02_04_0042 + 19182251-19182562,19182626-19182853
Length = 179
Score = 25.0 bits (52), Expect = 8.3
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 96 ALACILAVVASDLPHPLSDAL 158
AL C+LA+ P P S+AL
Sbjct: 113 ALPCLLALATPSAPFPFSEAL 133
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,686,660
Number of Sequences: 37544
Number of extensions: 93915
Number of successful extensions: 289
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 289
length of database: 14,793,348
effective HSP length: 50
effective length of database: 12,916,148
effective search space used: 258322960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -