Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_B08
(214 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_20896| Best HMM Match : TSP_1 (HMM E-Value=4.8e-28) 28 1.3
SB_34988| Best HMM Match : zf-CCHC (HMM E-Value=3e-12) 27 2.3
SB_2625| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.1
SB_29947| Best HMM Match : Fasciclin (HMM E-Value=2.3e-33) 26 4.1
SB_33021| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.4
SB_49777| Best HMM Match : Peptidase_C1 (HMM E-Value=0) 26 5.4
SB_6454| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.4
SB_51847| Best HMM Match : Peptidase_S28 (HMM E-Value=2.7e-33) 25 7.1
SB_4835| Best HMM Match : WWE (HMM E-Value=3.7e-19) 25 7.1
SB_29421| Best HMM Match : N_methyl (HMM E-Value=0.58) 25 9.4
SB_31133| Best HMM Match : 7tm_1 (HMM E-Value=0.11) 25 9.4
SB_8213| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.4
>SB_20896| Best HMM Match : TSP_1 (HMM E-Value=4.8e-28)
Length = 588
Score = 27.9 bits (59), Expect = 1.3
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +1
Query: 19 QVY*PIDSVKENKILK*WLLRVLCTSRSRVFSLLWPVTCPIRSQ 150
++Y P++S + N LK W LCT ++ ++L W T PI Q
Sbjct: 454 RIYNPVES-RFN--LKTWDNNFLCTPKNSPYNLEWSRTGPIEGQ 494
>SB_34988| Best HMM Match : zf-CCHC (HMM E-Value=3e-12)
Length = 469
Score = 27.1 bits (57), Expect = 2.3
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = -2
Query: 138 GASHWPQQREYTRARRTEHTKEPSFQY 58
G +H P E R R+ EH ++P Y
Sbjct: 268 GHAHTPHSHEGKRGRKREHDRDPDQNY 294
>SB_2625| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 434
Score = 26.6 bits (56), Expect = 3.1
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +1
Query: 73 LLRVLCTSRSRVFSLLWPVTCPIRSQMRYKFDTYETKHMESWPELP 210
L +LC+ + R S L P+ SQ RY + Y + + W P
Sbjct: 10 LFTILCSFQVRSISFLLADRSPVASQQRY-WSAYGYEAPQRWSPAP 54
>SB_29947| Best HMM Match : Fasciclin (HMM E-Value=2.3e-33)
Length = 725
Score = 26.2 bits (55), Expect = 4.1
Identities = 12/54 (22%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = -2
Query: 159 ITHLRADGASHWPQQREYTRARRTEHTKEPS-FQYFIFFYRVDRLINLTRNSNE 1
I + +D ++W ++ RR H K+ +Q+ +Y+ + L +N N+
Sbjct: 669 IASIASDDLAYWSASSDHCSKRRGSHPKQHQYYQWNGLYYQQGTPLLLEKNDND 722
>SB_33021| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 157
Score = 25.8 bits (54), Expect = 5.4
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = -2
Query: 150 LRADGASHWPQQREYTRARRTEHTKEPSFQYFIFFYRVDRLINLTRNSNE 1
LR G + +++ YT ++ +H K+ + +Y+VD +TR E
Sbjct: 71 LRLRGGAKKRKKKNYTTPKKIKHKKKKVKLAVLKYYKVDENGKITRLRRE 120
>SB_49777| Best HMM Match : Peptidase_C1 (HMM E-Value=0)
Length = 298
Score = 25.8 bits (54), Expect = 5.4
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +2
Query: 158 INLIHTKQNTWKAGRNF 208
I+ I++ TWKAG+NF
Sbjct: 35 IDFINSLHTTWKAGKNF 51
>SB_6454| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 177
Score = 25.8 bits (54), Expect = 5.4
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = -2
Query: 138 GASHWPQQREYTRARRTEHTKEPSFQYFIFFYRV 37
G+ + P YT T +EP Q +FF+R+
Sbjct: 139 GSGYQPGDPCYTAKETTNQCREPRSQENVFFFRM 172
>SB_51847| Best HMM Match : Peptidase_S28 (HMM E-Value=2.7e-33)
Length = 1224
Score = 25.4 bits (53), Expect = 7.1
Identities = 20/53 (37%), Positives = 25/53 (47%)
Frame = +3
Query: 39 LCKRK*NTEMMAPSCALYVALACILAVVASDLPHPLSDAL*I*YIRNKTHGKL 197
+C T+ +AP A V AC L ASD L+DA + Y N T G L
Sbjct: 263 MCDYPYATDFLAPLPANPVNYACKLLATASDRLSGLADAAGLAY--NGTSGTL 313
>SB_4835| Best HMM Match : WWE (HMM E-Value=3.7e-19)
Length = 320
Score = 25.4 bits (53), Expect = 7.1
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = -2
Query: 198 PAFHVFCFVCIK 163
P H+FCF+CIK
Sbjct: 85 PCGHMFCFLCIK 96
>SB_29421| Best HMM Match : N_methyl (HMM E-Value=0.58)
Length = 534
Score = 25.0 bits (52), Expect = 9.4
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -3
Query: 146 ERMGQVTGHNSENTRERDVQSTRRSHHFSILFSFT 42
E+ + NS RERDV+ R +I F FT
Sbjct: 491 EKDEKEAARNSRRVRERDVRVKLRFRRHAIGFEFT 525
>SB_31133| Best HMM Match : 7tm_1 (HMM E-Value=0.11)
Length = 275
Score = 25.0 bits (52), Expect = 9.4
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = -2
Query: 141 DGASHWPQQRE 109
DGASHW QQ E
Sbjct: 241 DGASHWVQQEE 251
>SB_8213| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 244
Score = 25.0 bits (52), Expect = 9.4
Identities = 8/29 (27%), Positives = 15/29 (51%)
Frame = +1
Query: 79 RVLCTSRSRVFSLLWPVTCPIRSQMRYKF 165
R LC + + + +W + C + S Y+F
Sbjct: 164 RSLCVASGYIIATIWVIACMVFSSDYYRF 192
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,662,481
Number of Sequences: 59808
Number of extensions: 109383
Number of successful extensions: 450
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 450
length of database: 16,821,457
effective HSP length: 49
effective length of database: 13,890,865
effective search space used: 291708165
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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