Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_B08
(214 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF488684-1|ABO43042.1| 1424|Homo sapiens nuclear receptor coacti... 27 8.3
BC122547-1|AAI22548.1| 1419|Homo sapiens nuclear receptor coacti... 27 8.3
BC119001-1|AAI19002.1| 1420|Homo sapiens nuclear receptor coacti... 27 8.3
BC092516-1|AAH92516.1| 1422|Homo sapiens nuclear receptor coacti... 27 8.3
AL034418-3|CAI42141.1| 1420|Homo sapiens nuclear receptor coacti... 27 8.3
AL034418-2|CAC17693.1| 1424|Homo sapiens nuclear receptor coacti... 27 8.3
AF016031-1|AAC51849.1| 1424|Homo sapiens thyroid hormone recepto... 27 8.3
AF012108-1|AAC51677.1| 1420|Homo sapiens Amplified in Breast Can... 27 8.3
AF010227-1|AAC51663.1| 1417|Homo sapiens receptor-associated coa... 27 8.3
AB209863-1|BAD93100.1| 1427|Homo sapiens nuclear receptor coacti... 27 8.3
>EF488684-1|ABO43042.1| 1424|Homo sapiens nuclear receptor
coactivator 3 protein.
Length = 1424
Score = 27.5 bits (58), Expect = 8.3
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = -2
Query: 201 RPAFHVFCFVCIKFITHLRADGASHWPQQREYTRARRTEHTKEPSFQY 58
RP F CI+ L DG S W Q+R Y A H + P +++
Sbjct: 290 RPGFEDIIRRCIQRFFSLN-DGQS-WSQKRHYQEAYLNGHAETPVYRF 335
>BC122547-1|AAI22548.1| 1419|Homo sapiens nuclear receptor
coactivator 3 protein.
Length = 1419
Score = 27.5 bits (58), Expect = 8.3
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = -2
Query: 201 RPAFHVFCFVCIKFITHLRADGASHWPQQREYTRARRTEHTKEPSFQY 58
RP F CI+ L DG S W Q+R Y A H + P +++
Sbjct: 290 RPGFEDIIRRCIQRFFSLN-DGQS-WSQKRHYQEAYLNGHAETPVYRF 335
>BC119001-1|AAI19002.1| 1420|Homo sapiens nuclear receptor
coactivator 3 protein.
Length = 1420
Score = 27.5 bits (58), Expect = 8.3
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = -2
Query: 201 RPAFHVFCFVCIKFITHLRADGASHWPQQREYTRARRTEHTKEPSFQY 58
RP F CI+ L DG S W Q+R Y A H + P +++
Sbjct: 290 RPGFEDIIRRCIQRFFSLN-DGQS-WSQKRHYQEAYLNGHAETPVYRF 335
>BC092516-1|AAH92516.1| 1422|Homo sapiens nuclear receptor
coactivator 3 protein.
Length = 1422
Score = 27.5 bits (58), Expect = 8.3
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = -2
Query: 201 RPAFHVFCFVCIKFITHLRADGASHWPQQREYTRARRTEHTKEPSFQY 58
RP F CI+ L DG S W Q+R Y A H + P +++
Sbjct: 290 RPGFEDIIRRCIQRFFSLN-DGQS-WSQKRHYQEAYLNGHAETPVYRF 335
>AL034418-3|CAI42141.1| 1420|Homo sapiens nuclear receptor
coactivator 3 protein.
Length = 1420
Score = 27.5 bits (58), Expect = 8.3
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = -2
Query: 201 RPAFHVFCFVCIKFITHLRADGASHWPQQREYTRARRTEHTKEPSFQY 58
RP F CI+ L DG S W Q+R Y A H + P +++
Sbjct: 290 RPGFEDIIRRCIQRFFSLN-DGQS-WSQKRHYQEAYLNGHAETPVYRF 335
>AL034418-2|CAC17693.1| 1424|Homo sapiens nuclear receptor
coactivator 3 protein.
Length = 1424
Score = 27.5 bits (58), Expect = 8.3
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = -2
Query: 201 RPAFHVFCFVCIKFITHLRADGASHWPQQREYTRARRTEHTKEPSFQY 58
RP F CI+ L DG S W Q+R Y A H + P +++
Sbjct: 290 RPGFEDIIRRCIQRFFSLN-DGQS-WSQKRHYQEAYLNGHAETPVYRF 335
>AF016031-1|AAC51849.1| 1424|Homo sapiens thyroid hormone receptor
activator molecule protein.
Length = 1424
Score = 27.5 bits (58), Expect = 8.3
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = -2
Query: 201 RPAFHVFCFVCIKFITHLRADGASHWPQQREYTRARRTEHTKEPSFQY 58
RP F CI+ L DG S W Q+R Y A H + P +++
Sbjct: 290 RPGFEDIIRRCIQRFFSLN-DGQS-WSQKRHYQEAYLNGHAETPVYRF 335
>AF012108-1|AAC51677.1| 1420|Homo sapiens Amplified in Breast Cancer
protein.
Length = 1420
Score = 27.5 bits (58), Expect = 8.3
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = -2
Query: 201 RPAFHVFCFVCIKFITHLRADGASHWPQQREYTRARRTEHTKEPSFQY 58
RP F CI+ L DG S W Q+R Y A H + P +++
Sbjct: 290 RPGFEDIIRRCIQRFFSLN-DGQS-WSQKRHYQEAYLNGHAETPVYRF 335
>AF010227-1|AAC51663.1| 1417|Homo sapiens receptor-associated
coactivator 3 protein.
Length = 1417
Score = 27.5 bits (58), Expect = 8.3
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = -2
Query: 201 RPAFHVFCFVCIKFITHLRADGASHWPQQREYTRARRTEHTKEPSFQY 58
RP F CI+ L DG S W Q+R Y A H + P +++
Sbjct: 290 RPGFEDIIRRCIQRFFSLN-DGQS-WSQKRHYQEAYLNGHAETPVYRF 335
>AB209863-1|BAD93100.1| 1427|Homo sapiens nuclear receptor
coactivator 3 isoform a variant protein.
Length = 1427
Score = 27.5 bits (58), Expect = 8.3
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = -2
Query: 201 RPAFHVFCFVCIKFITHLRADGASHWPQQREYTRARRTEHTKEPSFQY 58
RP F CI+ L DG S W Q+R Y A H + P +++
Sbjct: 294 RPGFEDIIRRCIQRFFSLN-DGQS-WSQKRHYQEAYLNGHAETPVYRF 339
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,892,076
Number of Sequences: 237096
Number of extensions: 530066
Number of successful extensions: 1262
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1262
length of database: 76,859,062
effective HSP length: 49
effective length of database: 65,241,358
effective search space used: 1370068518
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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