Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_B08
         (214 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016451-12|AAB65994.1|  317|Caenorhabditis elegans Hypothetical...    27   1.8  
Z81482-5|CAB03956.3|  409|Caenorhabditis elegans Hypothetical pr...    27   2.4  
U72211-1|AAB97099.1|  409|Caenorhabditis elegans putative transc...    27   2.4  
U50068-5|AAB37734.1|  722|Caenorhabditis elegans Temporarily ass...    26   3.2  
AC024805-13|AAK39335.1|  246|Caenorhabditis elegans Hypothetical...    26   4.2  
Z82076-1|CAB04934.1|  363|Caenorhabditis elegans Hypothetical pr...    25   5.5  
Z47808-7|CAA87771.2|  934|Caenorhabditis elegans Hypothetical pr...    25   5.5  
Z73906-6|CAA98113.1|  824|Caenorhabditis elegans Hypothetical pr...    25   7.3  
U97196-10|AAB52463.2|   81|Caenorhabditis elegans Hypothetical p...    25   7.3  
AL132904-3|CAB60972.1|  718|Caenorhabditis elegans Hypothetical ...    25   7.3  
AL110490-16|CAB54451.2|  922|Caenorhabditis elegans Hypothetical...    25   7.3  
Z35663-7|CAA84734.1|  328|Caenorhabditis elegans Hypothetical pr...    25   9.7  
U88181-4|AAU05583.1|  299|Caenorhabditis elegans Hypothetical pr...    25   9.7  
U88181-3|AAB42302.2|  523|Caenorhabditis elegans Hypothetical pr...    25   9.7  

>AF016451-12|AAB65994.1|  317|Caenorhabditis elegans Hypothetical
           protein C03A7.13 protein.
          Length = 317

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = -1

Query: 178 FRMYQIYNASESGWGKSLATTARIHASATYRAHEGAIISVF 56
           F  +Q+YN   +   +S      +HA  T R ++  ++SVF
Sbjct: 103 FNGFQVYNKIGNALCESALADQNLHAFLTSRQYDIGVVSVF 143


>Z81482-5|CAB03956.3|  409|Caenorhabditis elegans Hypothetical
           protein C40H5.5 protein.
          Length = 409

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 59  Y*NDGSFVCSVRRARVYSRCC 121
           Y  DG F+C    A+ Y +CC
Sbjct: 151 YVRDGVFLCRADHAKRYQKCC 171


>U72211-1|AAB97099.1|  409|Caenorhabditis elegans putative
           transcription factor TTX-3 protein.
          Length = 409

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 59  Y*NDGSFVCSVRRARVYSRCC 121
           Y  DG F+C    A+ Y +CC
Sbjct: 151 YVRDGVFLCRADHAKRYQKCC 171


>U50068-5|AAB37734.1|  722|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 292 protein.
          Length = 722

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +1

Query: 49  ENKILK*WLLRVLCTSRSRVFSLLWPVTCPIRSQMRYKFDTY 174
           ENK L   +L+++     +    LW V  P++S M   +D Y
Sbjct: 442 ENKNLGSIVLKIVLQMICKTGGALWKVNIPLKSTMIVGYDLY 483


>AC024805-13|AAK39335.1|  246|Caenorhabditis elegans Hypothetical
           protein Y51H7C.2 protein.
          Length = 246

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = -1

Query: 157 NASESGWGKSLATTARIHASATYRAHEGAIISVFYFLLQSRSVN 26
           N  +  W  ++AT A+ HA+   + H+G +  V    + S  +N
Sbjct: 55  NIMKMKWNVTIATAAQNHANKCPKGHDGPLEGVSGECMWSGHIN 98


>Z82076-1|CAB04934.1|  363|Caenorhabditis elegans Hypothetical
           protein W07G1.2 protein.
          Length = 363

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = +1

Query: 79  RVLCTSRSRVFSLLWPVTCPIRSQMRYKFDTYETKHMESW 198
           +++  +R      + PV C   S++R + DTY  +   SW
Sbjct: 323 KIVAVARKTTIVKVVPVECDKDSELRKETDTYFRQLNNSW 362


>Z47808-7|CAA87771.2|  934|Caenorhabditis elegans Hypothetical
           protein D2013.5 protein.
          Length = 934

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -2

Query: 63  QYFIFFYRVDRLINLTRNS 7
           Q  + FYR+ +++NLT N+
Sbjct: 848 QTIVLFYRIQKMVNLTCNA 866


>Z73906-6|CAA98113.1|  824|Caenorhabditis elegans Hypothetical
           protein D2030.6 protein.
          Length = 824

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +1

Query: 49  ENKILK*WLLRVLCTSRSRVFSLLWPVTCPIRSQMRYKFDTY 174
           ENK L   +L+++     +    LW V  P+++ M   +D Y
Sbjct: 544 ENKNLGSIVLKIVLQMICKTGGALWKVNIPLKNTMIVGYDLY 585


>U97196-10|AAB52463.2|   81|Caenorhabditis elegans Hypothetical
           protein B0207.10 protein.
          Length = 81

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 23  FINRSTL*KKIKY*NDGSFVCSVRRARVYSRCCG 124
           F NR+T+ ++ K  N   FVC V  A +    CG
Sbjct: 36  FNNRNTI-RRAKLMNSSHFVCIVMTATLLVTVCG 68


>AL132904-3|CAB60972.1|  718|Caenorhabditis elegans Hypothetical
           protein Y111B2A.3 protein.
          Length = 718

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 14/30 (46%), Positives = 15/30 (50%)
 Frame = -1

Query: 145 SGWGKSLATTARIHASATYRAHEGAIISVF 56
           S W KSL    R   SA Y+A  GAI   F
Sbjct: 380 STWFKSLEVEKRRIPSAIYKAVNGAIEETF 409


>AL110490-16|CAB54451.2|  922|Caenorhabditis elegans Hypothetical
           protein Y48B6A.11 protein.
          Length = 922

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -2

Query: 150 LRADGASHWPQQREYTRARRTEHTKEPSFQYF 55
           LR+D    + Q+RE+  ARR E       QYF
Sbjct: 512 LRSDTRIDFYQEREFNHARRAEWPHCAVCQYF 543


>Z35663-7|CAA84734.1|  328|Caenorhabditis elegans Hypothetical
           protein T04A8.8 protein.
          Length = 328

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
 Frame = +1

Query: 103 RVFSLLW--PVTCPIRSQMRYKFDTYETKHMESW 198
           R+++  W  PV+C + S      DTY T     W
Sbjct: 184 RIYATKWGCPVSCVVFSHNGKTIDTYTTPQSLGW 217


>U88181-4|AAU05583.1|  299|Caenorhabditis elegans Hypothetical
           protein C55B6.1b protein.
          Length = 299

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -1

Query: 205 VPASFPCVLFRMYQIYNASES 143
           V A    + FR+YQIY A+ES
Sbjct: 176 VRAILESIAFRVYQIYAAAES 196


>U88181-3|AAB42302.2|  523|Caenorhabditis elegans Hypothetical
           protein C55B6.1a protein.
          Length = 523

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -1

Query: 205 VPASFPCVLFRMYQIYNASES 143
           V A    + FR+YQIY A+ES
Sbjct: 400 VRAILESIAFRVYQIYAAAES 420


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,925,934
Number of Sequences: 27780
Number of extensions: 82402
Number of successful extensions: 279
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 274
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 279
length of database: 12,740,198
effective HSP length: 50
effective length of database: 11,351,198
effective search space used: 227023960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)