Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_B07
         (415 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0176 + 12637287-12637376,12638108-12638280,12638631-126387...    33   0.12 
02_05_0508 - 29623173-29623301,29623410-29623575,29623691-296237...    31   0.28 
05_04_0091 + 17839118-17839303,17840876-17840923,17841381-178415...    28   3.4  
03_05_0674 + 26619579-26619658,26620020-26620746,26620999-266214...    28   3.4  
05_01_0505 + 4207841-4208455,4209982-4210143,4210247-4210717           27   4.5  
03_05_0679 + 26678131-26679204                                         27   4.5  
05_04_0006 - 17072576-17072950,17072969-17073179,17075807-17075949     27   5.9  

>06_02_0176 +
           12637287-12637376,12638108-12638280,12638631-12638743,
           12639125-12639313,12639397-12639464,12639601-12639684,
           12639791-12639844,12640445-12640525,12640615-12640708,
           12640830-12640903,12640976-12641086,12641299-12641355,
           12641458-12641562,12641656-12641772,12641900-12642003,
           12642229-12642394,12642513-12642641
          Length = 602

 Score = 32.7 bits (71), Expect = 0.12
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -1

Query: 256 VRISSGYADVGVLVVGFNVIGHFFPTTFHHPLSH 155
           V++  G A +   V G +VI H FP T+  PL+H
Sbjct: 34  VKVEYGDAAIAADVAGAHVISHAFPHTYGQPLAH 67


>02_05_0508 -
           29623173-29623301,29623410-29623575,29623691-29623794,
           29623888-29624004,29624315-29624371,29624475-29624519,
           29624610-29624720,29624788-29624861,29624967-29625060,
           29625744-29625797,29626040-29626123,29626244-29626311,
           29626400-29626588,29627193-29627305,29627525-29627697,
           29628444-29628533
          Length = 555

 Score = 31.5 bits (68), Expect = 0.28
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -1

Query: 256 VRISSGYADVGVLVVGFNVIGHFFPTTFHHPLSH 155
           VR+  G A +     G +VI H FP T+  PL+H
Sbjct: 34  VRVEYGDAAIAADPAGAHVISHAFPHTYGQPLAH 67


>05_04_0091 +
           17839118-17839303,17840876-17840923,17841381-17841526,
           17841616-17841664,17842260-17842316,17842460-17842627,
           17842950-17843011,17843103-17843190,17843277-17843388,
           17843472-17843548,17843622-17843759,17844424-17844588,
           17844667-17844780,17845026-17845122,17845242-17845390
          Length = 551

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 15/43 (34%), Positives = 26/43 (60%)
 Frame = +2

Query: 230 IGVARGDTDKERQISTNDNWMNKVEATTYAVDLKDEVEFVPIR 358
           +GV   D  K+ +I   DN   ++E++T  +  +D V+FVP+R
Sbjct: 459 VGVGNADF-KQMEILDGDNG-KRLESSTGRIATRDIVQFVPMR 499


>03_05_0674 +
           26619579-26619658,26620020-26620746,26620999-26621486,
           26621746-26621902,26621975-26621998
          Length = 491

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +2

Query: 275 TNDNWMNKVEATTYAVDLKDEVEFVPIRY 361
           ++DN   K+  TT  V L + V F PIRY
Sbjct: 175 SSDNTAIKIALTTLIVTLPEAVRFRPIRY 203


>05_01_0505 + 4207841-4208455,4209982-4210143,4210247-4210717
          Length = 415

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -1

Query: 220 LVVGFNVIGHFFPTTFHHPLSHRNFRGLCRGNFMNL 113
           L+VG N  G+     F   + H  + GL RGNF+N+
Sbjct: 162 LMVGSN--GNSTAEVFQSIMKHEGWTGLFRGNFVNV 195


>03_05_0679 + 26678131-26679204
          Length = 357

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -1

Query: 169 HPLSHRNFRGLCRGNFMNLHVRSYVRFHW 83
           H L   N+RGLCRG    LH  +    HW
Sbjct: 296 HGLGGDNYRGLCRG----LHAGAVSLLHW 320


>05_04_0006 - 17072576-17072950,17072969-17073179,17075807-17075949
          Length = 242

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
 Frame = +2

Query: 197 NHVETDNQDADIGVARG--DTDKERQISTNDNWMNKVEATTYA 319
           NHVE DNQ+ D  + RG  +T    Q+++   ++ + +A T A
Sbjct: 163 NHVEDDNQEGDGSMGRGGEETLTYAQLASGVRYLLQEKAYTRA 205


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,753,048
Number of Sequences: 37544
Number of extensions: 177246
Number of successful extensions: 462
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 462
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 742607976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)