Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_B07
         (415 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18332| Best HMM Match : WAP (HMM E-Value=9.5)                       31   0.28 
SB_3125| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.38 
SB_40968| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.6  
SB_30444| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.1  
SB_38309| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.1  
SB_28816| Best HMM Match : PAS (HMM E-Value=0.0047)                    27   8.1  
SB_24364| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.1  

>SB_18332| Best HMM Match : WAP (HMM E-Value=9.5)
          Length = 270

 Score = 31.5 bits (68), Expect = 0.28
 Identities = 16/58 (27%), Positives = 27/58 (46%)
 Frame = -1

Query: 355 YWYEFHFVFQVHCVCGRFYFIHPVIICGYLPFFVRISSGYADVGVLVVGFNVIGHFFP 182
           ++ +  FV++    C    F+    +CG+L  F R S G+     L+    +I HF P
Sbjct: 2   HFSQIRFVYRSVLTCYNRSFLKRRFLCGFLAIFGRFSCGFIAASALL---RLIKHFLP 56


>SB_3125| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1268

 Score = 31.1 bits (67), Expect = 0.38
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = +2

Query: 182 REEMTNHVETDNQDADIGVARGDTDKERQISTNDNWMNKVEATTYAVDLKDEV 340
           R+E  N  E+ N   +I +   D +   Q+   D+  NKV      +D+ D V
Sbjct: 576 RQEQQNQQESPNLQENINIVLEDCEVPEQVRLEDDSQNKVSTKAKLLDIPDIV 628


>SB_40968| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 183

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 17/54 (31%), Positives = 28/54 (51%)
 Frame = +2

Query: 197 NHVETDNQDADIGVARGDTDKERQISTNDNWMNKVEATTYAVDLKDEVEFVPIR 358
           N  ET++        RG+  K+ +IS     M+K+ AT      K++ +F+PIR
Sbjct: 128 NECETESVRKRCKSTRGNLKKKLRISRPSLNMDKMMATKLYKGKKEKKDFLPIR 181


>SB_30444| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 80

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +2

Query: 257 KERQISTNDNWMNKVEATTYAVDLKDEVEFVPI 355
           K R + TND WM+       A+  +  V+FV +
Sbjct: 23  KTRHLQTNDTWMSNYRKIQEALLTRKAVQFVVV 55


>SB_38309| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 218

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 4/55 (7%)
 Frame = +2

Query: 173 ESSREEMTNHVETDNQ----DADIGVARGDTDKERQISTNDNWMNKVEATTYAVD 325
           E   +E  +H ETDN     D D    + D D  R+    DN  N + A  Y  D
Sbjct: 142 EDGYDEYDSHGETDNDDDDGDDDGSGGKDDGDNFRENKVVDNSDNNLAADDYDAD 196


>SB_28816| Best HMM Match : PAS (HMM E-Value=0.0047)
          Length = 405

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
 Frame = -1

Query: 322 HCVCGRFYFIHP--VIICGYLPFFVRISSGYADVGVLVVGFNVIGHFFPTTFHHPLSHRN 149
           H   G+F ++    V ICGYLP  V  +SGY D         ++     +      +  +
Sbjct: 81  HSSDGKFIYVDQRIVSICGYLPQEVIGTSGY-DY-FHPEDLEIVAQSHKSALQGETAVSS 138

Query: 148 FRGLCR-GNFMNLHVRS 101
           +R LC+ G+++ L  RS
Sbjct: 139 YRFLCKSGHYIPLRTRS 155


>SB_24364| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 648

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
 Frame = +2

Query: 173 ESSREEMTNHVE---TDNQDADIGVARGDTDKERQISTNDNWMNKVEAT 310
           E+S+ +  N  +   T++ D D      D DK++  +TND+  +K   T
Sbjct: 75  EASQSQTVNEDKVPTTNDDDEDKASTTNDDDKDKASTTNDDDQDKASTT 123


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,645,831
Number of Sequences: 59808
Number of extensions: 218749
Number of successful extensions: 561
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 764823134
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)