Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_B07
(415 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L23651-7|AAM22042.1| 926|Caenorhabditis elegans Associated with... 30 0.76
L23651-6|AAK84496.3| 960|Caenorhabditis elegans Associated with... 30 0.76
AF077540-5|AAC26308.1| 417|Caenorhabditis elegans C-type lectin... 30 0.76
AL110478-12|CAM33509.1| 108|Caenorhabditis elegans Hypothetical... 29 1.8
AL110478-9|CAB54343.2| 113|Caenorhabditis elegans Hypothetical ... 29 1.8
Z29095-2|CAD18875.1| 2056|Caenorhabditis elegans Hypothetical pr... 27 4.1
Z29095-1|CAA82353.2| 2045|Caenorhabditis elegans Hypothetical pr... 27 4.1
Z69663-5|CAA93512.2| 1002|Caenorhabditis elegans Hypothetical pr... 27 7.1
Z69661-8|CAA93496.2| 1002|Caenorhabditis elegans Hypothetical pr... 27 7.1
Z32679-2|CAA83592.1| 385|Caenorhabditis elegans Hypothetical pr... 27 7.1
DQ178241-1|ABA18180.1| 1010|Caenorhabditis elegans argonaute-lik... 27 7.1
>L23651-7|AAM22042.1| 926|Caenorhabditis elegans Associated with
ran (nuclear import/export) function protein 2, isoform
b protein.
Length = 926
Score = 29.9 bits (64), Expect = 0.76
Identities = 16/57 (28%), Positives = 30/57 (52%)
Frame = +2
Query: 164 GMMESSREEMTNHVETDNQDADIGVARGDTDKERQISTNDNWMNKVEATTYAVDLKD 334
G ++ +EE N +D++DAD+ D D+E +I DN ++++ +D D
Sbjct: 753 GSLDGDQEEY-NSKSSDSEDADLDDDDEDDDEEAEIQIIDNGESQLKLAMDRIDRLD 808
>L23651-6|AAK84496.3| 960|Caenorhabditis elegans Associated with
ran (nuclear import/export) function protein 2, isoform
a protein.
Length = 960
Score = 29.9 bits (64), Expect = 0.76
Identities = 16/57 (28%), Positives = 30/57 (52%)
Frame = +2
Query: 164 GMMESSREEMTNHVETDNQDADIGVARGDTDKERQISTNDNWMNKVEATTYAVDLKD 334
G ++ +EE N +D++DAD+ D D+E +I DN ++++ +D D
Sbjct: 790 GSLDGDQEEY-NSKSSDSEDADLDDDDEDDDEEAEIQIIDNGESQLKLAMDRIDRLD 845
>AF077540-5|AAC26308.1| 417|Caenorhabditis elegans C-type lectin
protein 20 protein.
Length = 417
Score = 29.9 bits (64), Expect = 0.76
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 211 GFNVIGHFFPTTFHHPLSHRNFRGLC 134
GF ++G+ FH PLSH+N +C
Sbjct: 26 GFTLVGNKCLKLFHEPLSHKNAERVC 51
>AL110478-12|CAM33509.1| 108|Caenorhabditis elegans Hypothetical
protein Y26D4A.17 protein.
Length = 108
Score = 28.7 bits (61), Expect = 1.8
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = -1
Query: 379 KKVYHLITYWYEFHFVFQVHCVCGRFYFIHPVIICGYLPFFVR-ISSGYADVGVLVVGFN 203
KK++ I +Y +F F F P+IIC YL FF I+ G+L +G
Sbjct: 43 KKIFDKINQFYILYFSFLRFHELNHF----PLIICIYLIFFFEYITFRSMTSGLLPLGVC 98
Query: 202 VIGHF 188
V+ HF
Sbjct: 99 VMLHF 103
>AL110478-9|CAB54343.2| 113|Caenorhabditis elegans Hypothetical
protein Y26D4A.5 protein.
Length = 113
Score = 28.7 bits (61), Expect = 1.8
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = -1
Query: 379 KKVYHLITYWYEFHFVFQVHCVCGRFYFIHPVIICGYLPFFVR-ISSGYADVGVLVVGFN 203
KK++ I +Y +F F F P+IIC YL FF I+ G+L +G
Sbjct: 48 KKIFDKINQFYILYFSFLRFHELNHF----PLIICIYLIFFFEYITFRSMTSGLLPLGVC 103
Query: 202 VIGHF 188
V+ HF
Sbjct: 104 VMLHF 108
>Z29095-2|CAD18875.1| 2056|Caenorhabditis elegans Hypothetical protein
R10E11.1b protein.
Length = 2056
Score = 27.5 bits (58), Expect = 4.1
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Frame = +2
Query: 173 ESSREEMTNHVETDN---QDADIGVARGDTDKERQISTNDNWMNK 298
E+S EE V+ D+ +DAD G+ GD+ K++ N + K
Sbjct: 1346 EASNEEAQRKVKEDDDDGEDADGGLGGGDSGKKKSSKNKKNNLKK 1390
>Z29095-1|CAA82353.2| 2045|Caenorhabditis elegans Hypothetical protein
R10E11.1a protein.
Length = 2045
Score = 27.5 bits (58), Expect = 4.1
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Frame = +2
Query: 173 ESSREEMTNHVETDN---QDADIGVARGDTDKERQISTNDNWMNK 298
E+S EE V+ D+ +DAD G+ GD+ K++ N + K
Sbjct: 1335 EASNEEAQRKVKEDDDDGEDADGGLGGGDSGKKKSSKNKKNNLKK 1379
>Z69663-5|CAA93512.2| 1002|Caenorhabditis elegans Hypothetical
protein F48F7.1 protein.
Length = 1002
Score = 26.6 bits (56), Expect = 7.1
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +2
Query: 212 DNQDADIGVARGDTDKERQISTNDNWMNKVEATTYAVDLKDEVEFVP 352
+ D D+ + GD+ ERQ S + W+ +V +T ++ V VP
Sbjct: 223 ERMDFDVTLP-GDSAVERQFSVSLKWVGQVSLSTLEDAMEGRVRQVP 268
>Z69661-8|CAA93496.2| 1002|Caenorhabditis elegans Hypothetical
protein F48F7.1 protein.
Length = 1002
Score = 26.6 bits (56), Expect = 7.1
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +2
Query: 212 DNQDADIGVARGDTDKERQISTNDNWMNKVEATTYAVDLKDEVEFVP 352
+ D D+ + GD+ ERQ S + W+ +V +T ++ V VP
Sbjct: 223 ERMDFDVTLP-GDSAVERQFSVSLKWVGQVSLSTLEDAMEGRVRQVP 268
>Z32679-2|CAA83592.1| 385|Caenorhabditis elegans Hypothetical
protein C05B5.2 protein.
Length = 385
Score = 26.6 bits (56), Expect = 7.1
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = -1
Query: 364 LITYWYEFHFVFQVHCVCGRFYFIHPVIICGYLP 263
++T W++F VF+ HC ++ F+ + I G +P
Sbjct: 272 MLTGWFDF--VFRKHCFLKKYGFLVAMGIAGNVP 303
>DQ178241-1|ABA18180.1| 1010|Caenorhabditis elegans argonaute-like
protein.
Length = 1010
Score = 26.6 bits (56), Expect = 7.1
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +2
Query: 212 DNQDADIGVARGDTDKERQISTNDNWMNKVEATTYAVDLKDEVEFVP 352
+ D D+ + GD+ ERQ S + W+ +V +T ++ V VP
Sbjct: 231 ERMDFDVTLP-GDSAVERQFSVSLKWVGQVSLSTLEDAMEGRVRQVP 276
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,768,514
Number of Sequences: 27780
Number of extensions: 167257
Number of successful extensions: 474
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 474
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 673122114
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -