Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_B04
         (397 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr 1|||M...    25   3.2  
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces...    25   4.3  
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma...    25   4.3  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    24   7.4  
SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|ch...    24   9.8  
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf...    24   9.8  
SPAC1782.05 |||phosphotyrosyl phosphatase activator homolog|Schi...    24   9.8  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    24   9.8  

>SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr
          1|||Manual
          Length = 757

 Score = 25.4 bits (53), Expect = 3.2
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = -1

Query: 46 NIPSIFILCYCLWHK 2
          ++PSI+ILC+C  H+
Sbjct: 34 SLPSIYILCHCSKHQ 48


>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 967

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +2

Query: 191 QRFENRERGYV*GSRSLRLY 250
           Q  +  +RGYV G R+LRLY
Sbjct: 901 QHKDTYDRGYVRGLRTLRLY 920


>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 963

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = -1

Query: 328 NGREHSSEHLLG*VFPSVPETGAYMKVQTQGSASSHVPSFT 206
           N    +  ++L    PS+ +   Y  +Q  GS+++ +PSF+
Sbjct: 158 NAYSFTGSNILPTQSPSLNQMQDYQNLQQNGSSNTTIPSFS 198


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
 Frame = -1

Query: 322  REHSSEHLLG*VFPSVP-ETGAYMKVQTQGSASSHVPSFTIFKSLCVLSLSQYKRHWLW 149
            R   S +    + PS   E+   +  Q +   SS +    IFKS+ VLSL      + W
Sbjct: 1355 RSEKSRYFSNVIIPSTDTESQLQVSFQYKPDTSSILLEGDIFKSMYVLSLDHLLSIYYW 1413


>SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 840

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -1

Query: 304 HLLG*VFPSVPETGAYMKVQTQGSASSHVPSFTIFKSLCVLSLSQY 167
           +L+G  F + P TG++ +   +  A    P   IF +  V+ LS Y
Sbjct: 417 NLIGIFFNAYPATGSFSRSAIKAKAGVKTPIAGIFTAAVVI-LSLY 461


>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
            Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1339

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +2

Query: 143  DLPQPVPLVLREGQDAQRFENRERGYV*GSRS 238
            D+P  +PL L + Q+ +  EN E+G +  ++S
Sbjct: 1048 DMPFTMPLSLNDKQNNEGDENCEKGQLFDAKS 1079


>SPAC1782.05 |||phosphotyrosyl phosphatase activator
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 352

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
 Frame = +3

Query: 153 NQCLLYCERDKTHSDLKIVKEGTCEE-ADPCVCTFIYAPVSGTDGNTYPNKCSLE 314
           N+C +   R   + DLK+ KEG   +  D  +C    A        + P   S+E
Sbjct: 8   NRCFVPVRRILDNEDLKLFKEGDAYKLIDSFICDLDEAVKDKPISASIPQSSSIE 62


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +3

Query: 267  VSGTDGNTYPNKC 305
            V GTDGN YP  C
Sbjct: 2070 VRGTDGNLYPFLC 2082


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,598,706
Number of Sequences: 5004
Number of extensions: 31418
Number of successful extensions: 75
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)