Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_B04
(397 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0047 + 31266940-31268394 29 1.8
01_06_0905 + 32880368-32880633,32882439-32882568,32882704-328828... 28 3.1
05_01_0383 + 2990812-2990855,2991364-2991463,2991554-2991622,299... 27 5.5
04_01_0514 + 6738706-6739230 27 7.2
01_07_0122 - 41196081-41196205,41197561-41198245,41198961-411993... 27 7.2
01_01_0363 + 2850954-2853675,2853819-2854225 27 7.2
12_02_0109 + 13701488-13701787,13701928-13701981,13702065-13702133 26 9.6
10_07_0029 + 12031711-12032464,12044289-12044386 26 9.6
10_05_0050 + 8565612-8566523 26 9.6
07_01_0469 - 3552409-3553368 26 9.6
03_02_0568 + 9514715-9514944,9515174-9515300,9515529-9515684,951... 26 9.6
>03_06_0047 + 31266940-31268394
Length = 484
Score = 28.7 bits (61), Expect = 1.8
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = +3
Query: 108 RNLRPVCGSDGKTYHNQCLLYCERDKTHSDLKIVKEGTCEEADPCVCTF 254
R + C D TY ++CE DK LK+ K ++ P + TF
Sbjct: 368 RRMIKCCQPDCDTYTMMIKMFCENDKVEMALKVWKYMRLKQFLPSMHTF 416
>01_06_0905 +
32880368-32880633,32882439-32882568,32882704-32882894,
32883625-32883852,32884062-32884224,32884343-32884416,
32884484-32884601,32884722-32884788,32885152-32885223,
32885350-32885513
Length = 490
Score = 27.9 bits (59), Expect = 3.1
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = +3
Query: 171 CERDKTHSDLKIVKEGTCEEAD--PCVCTFIYAPVSGTDG 284
C D+ + L+ E C+ +D PC TF Y SGT G
Sbjct: 151 CSDDRCTAALQ-TSEAVCQTSDNSPCGYTFTYGDGSGTSG 189
>05_01_0383 +
2990812-2990855,2991364-2991463,2991554-2991622,
2991724-2991960,2992045-2992228,2992307-2992442,
2992529-2992691,2992958-2993108,2993154-2993278,
2993349-2993504,2993792-2993860,2993951-2994019,
2994127-2994264,2994626-2994773,2994856-2994866,
2995212-2995352,2995441-2995569,2995860-2995899,
2996020-2996348,2996902-2996919
Length = 818
Score = 27.1 bits (57), Expect = 5.5
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = +2
Query: 32 YTRYISDRRCAD--IRRNSAAVVMRVRKKLKTGLRIRRQDLPQPVPLVLREGQDAQRF 199
Y ++S R A+ ++N A+ RV+ +R + DLP L++REG + RF
Sbjct: 508 YKNFVSQRSDANGWYQKNGVAL-FRVQGLKHDCIRAIQVDLPLKQSLLVREGSEPDRF 564
>04_01_0514 + 6738706-6739230
Length = 174
Score = 26.6 bits (56), Expect = 7.2
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +3
Query: 117 RPVCGSDGKTYHNQCLLYCERDKTHSDL 200
RP G + T+ + C + D+ HSDL
Sbjct: 117 RPTAGENDTTFSHMCAVMKGMDRMHSDL 144
>01_07_0122 -
41196081-41196205,41197561-41198245,41198961-41199329,
41199405-41199514,41200539-41200833
Length = 527
Score = 26.6 bits (56), Expect = 7.2
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = -1
Query: 283 PSVPETGAYMKVQTQGSASSHVPSFTIFKSLCVLSLSQYKRHWL 152
PSVP + T S+ + + T+F + +SLS Y RH L
Sbjct: 291 PSVPRMKQLAQTITNSSSGNLGLNHTVFGRVKQISLSSYLRHSL 334
>01_01_0363 + 2850954-2853675,2853819-2854225
Length = 1042
Score = 26.6 bits (56), Expect = 7.2
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = -1
Query: 394 GCISATLTSWHSPRCIISRDGANGREHSSEHLLG*VFPS 278
G S TLTSW+S + +G H ++G PS
Sbjct: 31 GLSSRTLTSWNSSTSFCNWEGVKCSRHRPTRVVGLSLPS 69
>12_02_0109 + 13701488-13701787,13701928-13701981,13702065-13702133
Length = 140
Score = 26.2 bits (55), Expect = 9.6
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = +2
Query: 185 DAQRFENRERGYV*GSRSLRLYLHICPGLWHRREH 289
D + +E+ ++G+V G+R++ YL + P + H
Sbjct: 49 DVRMWEDFDKGHVAGARNVPYYLSVTPRAKEKNPH 83
>10_07_0029 + 12031711-12032464,12044289-12044386
Length = 283
Score = 26.2 bits (55), Expect = 9.6
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +3
Query: 111 NLRPVCGSDGKTYHNQCLLYCERDKTHSDL 200
+ RP G + T+ + C + D+ HSDL
Sbjct: 115 SFRPTAGENDTTFGHMCAVMRGLDRMHSDL 144
>10_05_0050 + 8565612-8566523
Length = 303
Score = 26.2 bits (55), Expect = 9.6
Identities = 15/67 (22%), Positives = 26/67 (38%)
Frame = +3
Query: 24 KMNILGIFLIXXXXXXXXXXLPSSCACARNLRPVCGSDGKTYHNQCLLYCERDKTHSDLK 203
+MN G++ I ++ +LR G+ TY+ C+ YC + D +
Sbjct: 117 EMNRGGVYRISNTHNMLVVLGCNTVGYTESLRSEGGAYSSTYYIGCMSYCNNSASAQDGQ 176
Query: 204 IVKEGTC 224
G C
Sbjct: 177 CAGVGCC 183
>07_01_0469 - 3552409-3553368
Length = 319
Score = 26.2 bits (55), Expect = 9.6
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +3
Query: 117 RPVCGSDGKTYHNQCLLYCERDKTHSDL 200
RP G + T+ + C++ D+ HSDL
Sbjct: 117 RPTAGENFTTFGHMCVVMRGMDRMHSDL 144
>03_02_0568 + 9514715-9514944,9515174-9515300,9515529-9515684,
9515765-9516102,9516191-9516329,9517083-9517152,
9517201-9517307,9517387-9517437,9517549-9517660,
9517783-9517869,9517958-9518133,9518479-9518586,
9518654-9518812,9518888-9518971,9519053-9519258,
9519565-9519666,9519768-9519877,9519963-9520114,
9520380-9520548,9520841-9520878,9521963-9522571,
9523314-9523784,9523786-9523871,9524396-9524906,
9525388-9525412,9526001-9526051,9526228-9526301,
9526412-9526534,9526667-9526738,9526924-9527020,
9527174-9527283
Length = 1649
Score = 26.2 bits (55), Expect = 9.6
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = +3
Query: 96 CACARNL-RPVCGSDGKTYHNQCLLYC 173
C C + L P+C G T+ +C+L C
Sbjct: 1186 CLCLKPLIHPLCCPKGHTFCKECILEC 1212
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,802,070
Number of Sequences: 37544
Number of extensions: 224833
Number of successful extensions: 725
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 684860244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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