Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_B03
         (237 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1235.15 |dga1|SPCC548.01|diacylglycerol O-acyltransferase |S...    26   0.76 
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    25   1.0  
SPCC285.09c |cgs2|pde1|cAMP-specific phosphodiesterase Cgs2|Schi...    23   5.4  
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    23   5.4  
SPBC409.04c |mis12||kinetochore protein Mis12|Schizosaccharomyce...    23   7.1  
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    23   7.1  
SPBC6B1.03c |||Pal1 family protein|Schizosaccharomyces pombe|chr...    22   9.4  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    22   9.4  
SPCC4G3.04c |coq5||C-methytransferase |Schizosaccharomyces pombe...    22   9.4  

>SPCC1235.15 |dga1|SPCC548.01|diacylglycerol O-acyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 25.8 bits (54), Expect = 0.76
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 222 IRRIRGLWSSCRDVLSPS 169
           IRR+ GLW+  +DV  P+
Sbjct: 319 IRRLEGLWNKYKDVFLPN 336


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 25.4 bits (53), Expect = 1.0
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 144 ATGRLNKTVMEITHLYKKTTNL 209
           + G  NK ++E  HLY   TNL
Sbjct: 18  SAGLTNKDIVETNHLYPTITNL 39


>SPCC285.09c |cgs2|pde1|cAMP-specific phosphodiesterase
           Cgs2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 346

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = -2

Query: 221 LEEYEVCGLLVEMCYLHHRFVQTARS*NFWEMNPRS 114
           L E  +   L+  C+L H +     S  F   NPR+
Sbjct: 102 LSEQRIKTFLITHCHLDHIYGAVINSAMFGPQNPRT 137


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1428

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = +2

Query: 125 SFPKNFS--YGPFEQNGDGDNTSLQEDHK 205
           +FPK+F   YG F  + +  NT L ED K
Sbjct: 537 TFPKSFKEVYGKF--SAEKQNTDLAEDAK 563


>SPBC409.04c |mis12||kinetochore protein Mis12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 13/56 (23%), Positives = 26/56 (46%)
 Frame = +2

Query: 68  ICVLN*MMSYQDDPNCYVGSFPKNFSYGPFEQNGDGDNTSLQEDHKPRILLMGLRR 235
           +  L  + SY  +   Y+ +F K+  Y    +     + ++QE  +  ++ M LRR
Sbjct: 73  VYTLRNIFSYPPELKGYMRTFGKDVDYSITTEQDAAMDQAIQEAAEKLVVKMQLRR 128


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1131

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = +2

Query: 179 NTSLQEDHKPRILLMGLR 232
           N SLQEDH  R  L  LR
Sbjct: 357 NVSLQEDHGKRRNLKSLR 374


>SPBC6B1.03c |||Pal1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 272

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -2

Query: 155 TARS*NFWEMNPRSN*DHLDNSSFNLKHK 69
           T  S N  ++N  SN D  DN+  NLK K
Sbjct: 225 TNESPNPTDINVCSNDDATDNTENNLKKK 253


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 10/19 (52%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
 Frame = +2

Query: 92  SYQD-DPNCYVGSFPKNFS 145
           +Y D D N  +GSFPK+F+
Sbjct: 44  TYVDSDGNRKIGSFPKDFT 62


>SPCC4G3.04c |coq5||C-methytransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 305

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 164 NGDGDNTSLQEDHKPRILLMGLRR 235
           NGD +   +  D  P +L +GLRR
Sbjct: 132 NGDRNTRVIVADINPDMLSVGLRR 155


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 929,166
Number of Sequences: 5004
Number of extensions: 15094
Number of successful extensions: 31
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 2,362,478
effective HSP length: 58
effective length of database: 2,072,246
effective search space used: 41444920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)