Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_B03
         (237 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0339 - 17721664-17722407,17722921-17723556                       28   1.2  
03_04_0127 - 17508808-17509029,17509195-17509938,17510004-175102...    27   2.8  
04_04_1609 + 34760576-34760688,34760781-34760948,34761566-347616...    26   3.7  
07_03_1116 - 24084162-24084201,24084481-24084570,24084640-240852...    25   8.6  
01_01_0125 - 1154626-1154685,1155100-1155195,1155578-1155652,115...    25   8.6  

>12_02_0339 - 17721664-17722407,17722921-17723556
          Length = 459

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 18/35 (51%), Positives = 20/35 (57%)
 Frame = +2

Query: 131 PKNFSYGPFEQNGDGDNTSLQEDHKPRILLMGLRR 235
           P+  S GPF  +GD  N    EDHK R LL  LRR
Sbjct: 61  PQVVSLGPFH-HGD-PNLLPMEDHKRRALLHFLRR 93


>03_04_0127 -
           17508808-17509029,17509195-17509938,17510004-17510242,
           17510334-17510436,17510666-17510770,17510838-17510906,
           17510998-17511402,17512048-17512156,17512240-17512295
          Length = 683

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 107 PNCYVGSFPKNFSYGPFEQ 163
           PNC +G +P + SY P  Q
Sbjct: 108 PNCVIGGYPLDVSYPPVVQ 126


>04_04_1609 +
           34760576-34760688,34760781-34760948,34761566-34761634,
           34762125-34762247,34762296-34762501,34762723-34762729,
           34762961-34763006,34763092-34763151,34763249-34763317,
           34763790-34763873,34764178-34764263,34764859-34764949,
           34765029-34765109,34765191-34765265,34765392-34765526
          Length = 470

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = +2

Query: 107 PNCYVGSFPKNFSYGPFEQNGDGDN--TSLQEDHKPRI 214
           PN  VGS  K   YG FE     +   + LQ++  PR+
Sbjct: 350 PNLIVGSITKESLYGAFENGITAEQIISFLQQNAHPRV 387


>07_03_1116 -
           24084162-24084201,24084481-24084570,24084640-24085220,
           24085653-24085822,24086006-24087074
          Length = 649

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +2

Query: 164 NGDGDNTSLQEDHKPRILL 220
           NGDG+  SL++D K R LL
Sbjct: 404 NGDGNAASLKDDPKTRELL 422


>01_01_0125 -
           1154626-1154685,1155100-1155195,1155578-1155652,
           1155729-1155831,1155986-1156078,1156774-1156886,
           1156981-1157124,1157247-1157357
          Length = 264

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +2

Query: 140 FSYGPFEQNGDGDNTSLQE 196
           F YG FE  GDG N+   E
Sbjct: 87  FHYGRFEDAGDGCNSGFSE 105


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,412,497
Number of Sequences: 37544
Number of extensions: 86704
Number of successful extensions: 148
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 14,793,348
effective HSP length: 57
effective length of database: 12,653,340
effective search space used: 265720140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)