Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_B03
(237 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_21614| Best HMM Match : RVT_1 (HMM E-Value=1.10002e-41) 31 0.11
SB_10116| Best HMM Match : RVT_1 (HMM E-Value=2.5e-33) 31 0.11
SB_4524| Best HMM Match : Ribosomal_S7e (HMM E-Value=0.59) 31 0.11
SB_22988| Best HMM Match : RVT_1 (HMM E-Value=5.70328e-43) 29 0.78
SB_57427| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00044) 29 0.78
SB_48325| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.78
SB_33083| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.78
SB_8360| Best HMM Match : RVT_1 (HMM E-Value=3.6e-07) 29 0.78
SB_3348| Best HMM Match : Borrelia_orfA (HMM E-Value=0.71) 29 0.78
SB_36986| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 4.1
SB_52072| Best HMM Match : DUF1168 (HMM E-Value=1.8) 25 7.2
SB_17996| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.6
>SB_21614| Best HMM Match : RVT_1 (HMM E-Value=1.10002e-41)
Length = 1047
Score = 31.5 bits (68), Expect = 0.11
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = -1
Query: 219 RRIRGLWSSCRDVLSPSPFCSNGP*LKFLGNEP 121
+ I+ +WS +++++ P CSN P + N+P
Sbjct: 659 KNIKNIWSGIKELITTKPTCSNQPSKLIINNKP 691
>SB_10116| Best HMM Match : RVT_1 (HMM E-Value=2.5e-33)
Length = 759
Score = 31.5 bits (68), Expect = 0.11
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = -1
Query: 219 RRIRGLWSSCRDVLSPSPFCSNGP*LKFLGNEP 121
+ I+ +WS +++++ P CSN P + N+P
Sbjct: 385 KNIKNIWSGIKELITTKPTCSNQPSKLIINNKP 417
>SB_4524| Best HMM Match : Ribosomal_S7e (HMM E-Value=0.59)
Length = 367
Score = 31.5 bits (68), Expect = 0.11
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = -1
Query: 219 RRIRGLWSSCRDVLSPSPFCSNGP*LKFLGNEP 121
+ I+ +WS +++++ P CSN P + N+P
Sbjct: 78 KNIKNIWSGIKELITTKPTCSNQPSKLIINNKP 110
>SB_22988| Best HMM Match : RVT_1 (HMM E-Value=5.70328e-43)
Length = 1029
Score = 28.7 bits (61), Expect = 0.78
Identities = 9/32 (28%), Positives = 19/32 (59%)
Frame = -1
Query: 219 RRIRGLWSSCRDVLSPSPFCSNGP*LKFLGNE 124
+ I+ +WS +++++ P CSN P + N+
Sbjct: 560 KNIKNIWSGIKELITTKPTCSNQPSKLIINNK 591
>SB_57427| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00044)
Length = 1693
Score = 28.7 bits (61), Expect = 0.78
Identities = 9/32 (28%), Positives = 19/32 (59%)
Frame = -1
Query: 219 RRIRGLWSSCRDVLSPSPFCSNGP*LKFLGNE 124
+ I+ +WS +++++ P CSN P + N+
Sbjct: 1438 KNIKNIWSGIKELITTKPTCSNQPSKLIINNK 1469
>SB_48325| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 872
Score = 28.7 bits (61), Expect = 0.78
Identities = 9/32 (28%), Positives = 19/32 (59%)
Frame = -1
Query: 219 RRIRGLWSSCRDVLSPSPFCSNGP*LKFLGNE 124
+ I+ +WS +++++ P CSN P + N+
Sbjct: 509 KNIKNIWSGIKELITTKPTCSNQPSKLIINNK 540
>SB_33083| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 413
Score = 28.7 bits (61), Expect = 0.78
Identities = 9/32 (28%), Positives = 19/32 (59%)
Frame = -1
Query: 219 RRIRGLWSSCRDVLSPSPFCSNGP*LKFLGNE 124
+ I+ +WS +++++ P CSN P + N+
Sbjct: 312 KNIKNIWSGIKELITTKPTCSNQPSKLIINNK 343
>SB_8360| Best HMM Match : RVT_1 (HMM E-Value=3.6e-07)
Length = 468
Score = 28.7 bits (61), Expect = 0.78
Identities = 9/32 (28%), Positives = 19/32 (59%)
Frame = -1
Query: 219 RRIRGLWSSCRDVLSPSPFCSNGP*LKFLGNE 124
+ I+ +WS +++++ P CSN P + N+
Sbjct: 115 KNIKNIWSGIKELITTKPTCSNQPSKLIINNK 146
>SB_3348| Best HMM Match : Borrelia_orfA (HMM E-Value=0.71)
Length = 500
Score = 28.7 bits (61), Expect = 0.78
Identities = 9/32 (28%), Positives = 19/32 (59%)
Frame = -1
Query: 219 RRIRGLWSSCRDVLSPSPFCSNGP*LKFLGNE 124
+ I+ +WS +++++ P CSN P + N+
Sbjct: 211 KNIKNIWSGIKELITTKPTCSNQPSKLIINNK 242
>SB_36986| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 628
Score = 26.2 bits (55), Expect = 4.1
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -2
Query: 125 NPRSN*DHLDNSSFNLKHKFIS 60
+P + DHL N+S N+ H+F+S
Sbjct: 420 SPGGDLDHLVNTSTNIGHRFLS 441
>SB_52072| Best HMM Match : DUF1168 (HMM E-Value=1.8)
Length = 346
Score = 25.4 bits (53), Expect = 7.2
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = -2
Query: 215 EYEVCGLLVEMCYLHHRFVQTARS*NFWEMNPRSN*DHLDNSS 87
+YEV L+ + C H RF + + + N W+ +H D SS
Sbjct: 97 DYEVKSLVCQGCKSHERFDRDSEAYNEWKATHICGINH-DGSS 138
>SB_17996| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 778
Score = 25.0 bits (52), Expect = 9.6
Identities = 11/46 (23%), Positives = 24/46 (52%)
Frame = -2
Query: 179 YLHHRFVQTARS*NFWEMNPRSN*DHLDNSSFNLKHKFISRTYFRV 42
Y HHR+ T + N ++P ++ H ++ ++ H+ I+ T +
Sbjct: 423 YHHHRYYITGIAINISPLSPSTSHHHQPSTYYHHHHQHITITTINI 468
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,551,036
Number of Sequences: 59808
Number of extensions: 102522
Number of successful extensions: 235
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 235
length of database: 16,821,457
effective HSP length: 56
effective length of database: 13,472,209
effective search space used: 296388598
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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