Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_B03
         (237 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC016668-1|AAH16668.1|  399|Homo sapiens Ras-related GTP binding...    30   1.5  
AL139260-1|CAI23049.1|  399|Homo sapiens Ras-related GTP binding...    30   1.5  
AF323609-1|AAG45221.1|  399|Homo sapiens GTPase-interacting prot...    30   1.5  
AF272035-1|AAG32662.1|  399|Homo sapiens Rag C protein.                30   1.5  

>BC016668-1|AAH16668.1|  399|Homo sapiens Ras-related GTP binding C
           protein.
          Length = 399

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 21/51 (41%), Positives = 24/51 (47%), Gaps = 14/51 (27%)
 Frame = +2

Query: 125 SFPKNFSYGPFEQN--------------GDGDNTSLQEDHKPRILLMGLRR 235
           SFPK+F YG  E+               G G      +  KPRILLMGLRR
Sbjct: 21  SFPKDFGYGVEEEEEEAAAAGGGVGAGAGGGCGPGGADSSKPRILLMGLRR 71


>AL139260-1|CAI23049.1|  399|Homo sapiens Ras-related GTP binding C
           protein.
          Length = 399

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 21/51 (41%), Positives = 24/51 (47%), Gaps = 14/51 (27%)
 Frame = +2

Query: 125 SFPKNFSYGPFEQN--------------GDGDNTSLQEDHKPRILLMGLRR 235
           SFPK+F YG  E+               G G      +  KPRILLMGLRR
Sbjct: 21  SFPKDFGYGVEEEEEEAAAAGGGVGAGAGGGCGPGGADSSKPRILLMGLRR 71


>AF323609-1|AAG45221.1|  399|Homo sapiens GTPase-interacting protein
           2 protein.
          Length = 399

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 21/51 (41%), Positives = 24/51 (47%), Gaps = 14/51 (27%)
 Frame = +2

Query: 125 SFPKNFSYGPFEQN--------------GDGDNTSLQEDHKPRILLMGLRR 235
           SFPK+F YG  E+               G G      +  KPRILLMGLRR
Sbjct: 21  SFPKDFGYGVEEEEEEAAAAGGGVGAGAGGGCGPGGADSSKPRILLMGLRR 71


>AF272035-1|AAG32662.1|  399|Homo sapiens Rag C protein.
          Length = 399

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 21/51 (41%), Positives = 24/51 (47%), Gaps = 14/51 (27%)
 Frame = +2

Query: 125 SFPKNFSYGPFEQN--------------GDGDNTSLQEDHKPRILLMGLRR 235
           SFPK+F YG  E+               G G      +  KPRILLMGLRR
Sbjct: 21  SFPKDFGYGVEEEEEEAAAAGGGVGAGAGGGCGPGGADSSKPRILLMGLRR 71


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,654,085
Number of Sequences: 237096
Number of extensions: 461636
Number of successful extensions: 775
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 771
length of database: 76,859,062
effective HSP length: 57
effective length of database: 63,344,590
effective search space used: 1330236390
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)