Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_B03
         (237 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024881-9|AAK71410.1|  588|Caenorhabditis elegans Hypothetical ...    28   1.0  
U41007-17|AAA82261.1|  507|Caenorhabditis elegans Hypothetical p...    27   1.3  
U41011-4|AAA82287.1|  294|Caenorhabditis elegans Hypothetical pr...    26   4.1  
AF040647-11|AAB94992.4|  270|Caenorhabditis elegans Hypothetical...    25   5.4  
U88314-6|AAF99886.1|  240|Caenorhabditis elegans Hypothetical pr...    25   9.5  
U23529-1|AAK39160.1|  269|Caenorhabditis elegans Hypothetical pr...    25   9.5  

>AC024881-9|AAK71410.1|  588|Caenorhabditis elegans Hypothetical
           protein Y97E10B.1 protein.
          Length = 588

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 14/26 (53%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
 Frame = +3

Query: 117 TWVHFPKILATGRLNKTVME--ITHL 188
           TW+HFP IL  G     V E  ITHL
Sbjct: 417 TWIHFPPILPNGLEKYEVNENVITHL 442


>U41007-17|AAA82261.1|  507|Caenorhabditis elegans Hypothetical
           protein C33H5.2 protein.
          Length = 507

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = +3

Query: 117 TWVHFPKILATGRLNKTVME--ITHLYKKTTNLV 212
           TW+H+P +L  G     V E  ITHL  KT N V
Sbjct: 340 TWLHYPPVLVNGLEKYEVEENVITHL--KTINWV 371


>U41011-4|AAA82287.1|  294|Caenorhabditis elegans Hypothetical
           protein D2024.4 protein.
          Length = 294

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -1

Query: 222 IRRIRGLWSSCRDVLSPSPFC 160
           I+ +RG+ S C +V SPS +C
Sbjct: 70  IQNLRGVESICANVTSPSQWC 90


>AF040647-11|AAB94992.4|  270|Caenorhabditis elegans Hypothetical
           protein F54D12.1 protein.
          Length = 270

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -1

Query: 222 IRRIRGLWSSCRDVLSPSPFCSNGP 148
           I  +  + S+C+D L P+P C + P
Sbjct: 135 IEYVYSITSNCKDWLKPTPTCQDCP 159


>U88314-6|AAF99886.1|  240|Caenorhabditis elegans Hypothetical
           protein C46H11.7 protein.
          Length = 240

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 198 SSCRDVLSPSPFCSNGP*LKFLGNEPT 118
           +SC D L+PS   S+ P L +L N+ T
Sbjct: 86  TSCADRLNPSTGVSDCPALAYLCNDTT 112


>U23529-1|AAK39160.1|  269|Caenorhabditis elegans Hypothetical
           protein C15B12.2 protein.
          Length = 269

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = -2

Query: 134 WEMNPRSN*DHLDNSSFNLKHKFISRTYFRVKIEI 30
           WEM  + N   LD+SS     K       R K+EI
Sbjct: 234 WEMRTKINNTMLDHSSIGSSAKLAVFLCLRAKLEI 268


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,028,086
Number of Sequences: 27780
Number of extensions: 82447
Number of successful extensions: 119
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 12,740,198
effective HSP length: 58
effective length of database: 11,128,958
effective search space used: 222579160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)