Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_B02
         (432 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    26   2.8  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    25   5.0  
SPBC15D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   6.6  
SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6 |Schi...    25   6.6  
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy...    25   6.6  
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos...    24   8.7  
SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces pombe...    24   8.7  

>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 422

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
 Frame = +3

Query: 189 GNYEPI--STGPAFVDFNHPNYPPKRYDNPLAR 281
           G+Y P   ST P    + +P+YPP  Y    AR
Sbjct: 117 GSYPPTQPSTQPLPQSYGYPSYPPAGYRGGSAR 149


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = +3

Query: 165 SQPSNGPGGNYEPISTGPAFVDFNHPNYPP 254
           S P N P     P+S  PA    + P  PP
Sbjct: 265 SSPPNSPPRPIAPVSMNPAINSTSKPPLPP 294


>SPBC15D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 212

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
 Frame = -1

Query: 213 QCLWVHNFRQDRLMVERR---KDPGSQYH 136
           Q LW HN   D+L + +     +PG+ Y+
Sbjct: 172 QFLWAHNIELDKLSIMKTGAVGEPGNMYY 200


>SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 624

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 74  RHPWPIRRRRKTRK 33
           +HPWP  R R+TR+
Sbjct: 282 QHPWPGTRHRETRE 295


>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -1

Query: 309 YLYETFTSHHGREGCRIAWVDNWD 238
           Y+Y++      +   R  WV+NWD
Sbjct: 55  YIYKSNPGMEIKNAIRNGWVENWD 78


>SPAC926.09c |fas1||fatty acid synthase beta subunit
            Fas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2073

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 11/29 (37%), Positives = 14/29 (48%), Gaps = 4/29 (13%)
 Frame = +3

Query: 159  FFSQPSNGP----GGNYEPISTGPAFVDF 233
            F + P+N P     G+Y PI   P F  F
Sbjct: 1560 FVTPPTNSPYAEVSGDYNPIHVSPTFAAF 1588


>SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 659

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -2

Query: 122 CRPMEHHYCPPRELCLRHP 66
           C P   H+C    LCL+ P
Sbjct: 25  CSPQTSHWCKYPALCLKSP 43


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,715,928
Number of Sequences: 5004
Number of extensions: 35447
Number of successful extensions: 94
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)