Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_B02
         (432 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1004 + 23244479-23244648,23245104-23245276,23245535-232456...    30   0.92 
06_03_0795 - 24683023-24683155,24685853-24686057,24686275-246864...    29   1.6  
03_02_0269 + 7001891-7002212,7003598-7004037                           28   2.8  
09_04_0286 + 16400695-16401369,16401473-16401658,16402115-164025...    28   3.7  
09_03_0184 - 13205741-13206181                                         28   3.7  
11_04_0321 - 16359390-16359539,16359674-16359746,16360448-163608...    27   4.9  
03_05_0517 - 25118232-25118730,25119002-25119273                       27   4.9  
08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,322...    27   6.5  
07_03_0817 - 21735283-21735358,21735719-21735796,21735885-217359...    27   8.6  

>07_03_1004 +
           23244479-23244648,23245104-23245276,23245535-23245638,
           23245849-23246037,23246508-23248076
          Length = 734

 Score = 29.9 bits (64), Expect = 0.92
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = -2

Query: 167 REERIRVRNTTRGHYCRPMEHHYCPPRE--LCLRHPWPIRRRRKTRKLSL 24
           R E I +R++  G     +  H+   R   +CL  PWP RRR  +R+ SL
Sbjct: 90  RSEVIAIRHSRTGR-AESLGAHWFLARASGVCLVFPWPARRRCPSRRRSL 138


>06_03_0795 -
           24683023-24683155,24685853-24686057,24686275-24686443,
           24686590-24686775,24686916-24687124,24687197-24687362
          Length = 355

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 128 HYCRPMEHHYCPPRELCLRHPW 63
           HYCR +E+ YC  + L  R  W
Sbjct: 181 HYCRSIENWYCLSKTLAEREAW 202


>03_02_0269 + 7001891-7002212,7003598-7004037
          Length = 253

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 288 SHHGREGCRIAWVDNWDD*NRR 223
           + H R+  R+AW D W D +R+
Sbjct: 62  TEHARQRMRVAWADGWVDGSRK 83


>09_04_0286 +
           16400695-16401369,16401473-16401658,16402115-16402575,
           16402678-16402836,16402914-16403265,16403360-16403653
          Length = 708

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 16/44 (36%), Positives = 19/44 (43%)
 Frame = +2

Query: 152 GSFLLSTIKRSWRKL*THKHWTGVRRFQSSQLSTQAIRQPSRPW 283
           G +  S +K  WR L  H H + V  FQ    S  A R P   W
Sbjct: 91  GGYSSSPLK--WRDLHHHHHHSPVSVFQGPSSSPAASRSPPASW 132


>09_03_0184 - 13205741-13206181
          Length = 146

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -2

Query: 95  PPRELCLRHPWPIRRRRKT 39
           PP++  LR  WPI++R KT
Sbjct: 125 PPKQQKLRSEWPIKKRPKT 143


>11_04_0321 -
           16359390-16359539,16359674-16359746,16360448-16360845,
           16360919-16362673,16362751-16362861,16363745-16363962,
           16364088-16364196
          Length = 937

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +3

Query: 246 YPPKRYDNPLARGGK 290
           YPPKRY NP+   G+
Sbjct: 859 YPPKRYSNPVGPAGR 873


>03_05_0517 - 25118232-25118730,25119002-25119273
          Length = 256

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = +3

Query: 153 DPFFSQPSNGPGGNYEPISTGPAFVDFNHPNYPPKRY 263
           D FF++    P GN     T P  VD   P  P + +
Sbjct: 37  DWFFTRKGESPQGNISKEETAPTGVDVTDPGRPGRAF 73


>08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,
            3220080-3223195,3223303-3223561,3223665-3223951,
            3224029-3224364,3224463-3224604,3224690-3224910,
            3224990-3225151,3225242-3225400,3225488-3225787,
            3226306-3226569,3227370-3227453
          Length = 1855

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 117  TAIVTTCGIANPDPFFSQPSNGPGGNYEPISTG 215
            T+  TT G  +PD   + P+  P G+Y P + G
Sbjct: 1800 TSPYTTSGGPSPDYSPTSPNYSPSGSYSPTAPG 1832


>07_03_0817 -
           21735283-21735358,21735719-21735796,21735885-21735945,
           21736038-21736069,21736144-21736221,21738046-21738213,
           21738711-21738897,21740019-21740160
          Length = 273

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = +3

Query: 150 PDPFFSQPSNGPGGNYEPISTGPAFVDFNHPNYPPKRY 263
           P PF    S  PGG Y+PI  GP  V    P + P R+
Sbjct: 216 PVPFGGPGSVPPGGRYDPI--GPPDV----PGFEPSRF 247


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,477,064
Number of Sequences: 37544
Number of extensions: 252100
Number of successful extensions: 709
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 709
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)