Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_B01
         (301 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0773 - 27974909-27977191                                         27   2.7  
04_01_0187 - 2153546-2154520,2154581-2155858                           25   8.3  

>04_04_0773 - 27974909-27977191
          Length = 760

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -2

Query: 210 CTKSGSASVKILKRQP*NLLQSM*SSVPDHLALYPGHEVRDPR 82
           C    S  V ++ R+P N   S  +++P+H   YP   VR PR
Sbjct: 629 CGLYTSQEVSVIARRPVNC--SAVAAIPEHQLNYPSISVRFPR 669


>04_01_0187 - 2153546-2154520,2154581-2155858
          Length = 750

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = -1

Query: 280 FYFTFVGEIFKLRESQTLILTFKLYKKWIRVCE 182
           +Y  F+   FK+ +  T +L   +  KW   CE
Sbjct: 118 YYRRFIDNFFKIAKPMTRLLQKDVKYKWSEECE 150


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,532,844
Number of Sequences: 37544
Number of extensions: 100853
Number of successful extensions: 186
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 339576272
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)