Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_A24
(216 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0795 - 24683023-24683155,24685853-24686057,24686275-246864... 30 0.29
12_02_0219 + 15822050-15824896 27 2.1
12_02_0216 + 15804110-15804284,15804341-15804351 27 2.7
09_02_0511 - 10079180-10079355,10079656-10079722,10080144-100801... 27 2.7
03_02_0260 - 6924532-6924757,6925443-6925546,6925729-6926007,692... 27 2.7
03_02_0259 - 6920472-6920579,6920744-6921022,6921115-6921390,692... 26 3.6
02_01_0138 + 999809-999821,1000456-1001341,1001424-1003221,10037... 26 3.6
01_06_0291 - 28236235-28236576,28236785-28236900,28237560-282377... 26 3.6
01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008 26 4.8
02_05_0996 - 33380363-33380597,33380767-33380851,33381206-333815... 25 8.3
>06_03_0795 -
24683023-24683155,24685853-24686057,24686275-24686443,
24686590-24686775,24686916-24687124,24687197-24687362
Length = 355
Score = 29.9 bits (64), Expect = 0.29
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -2
Query: 137 HYCRPMEHHYCPPRELCLRQPW 72
HYCR +E+ YC + L R+ W
Sbjct: 181 HYCRSIENWYCLSKTLAEREAW 202
>12_02_0219 + 15822050-15824896
Length = 948
Score = 27.1 bits (57), Expect = 2.1
Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +3
Query: 3 NSADNSDTIRQ*KLPC-FSSSPYWPWLPQTEFTWWTIVV 116
++ D D +R+ ++ C F+ P WPWL ++ T+V+
Sbjct: 266 STLDFGDPLRKHEMHCRFTQGPPWPWLAVAS-SYGTLVI 303
>12_02_0216 + 15804110-15804284,15804341-15804351
Length = 61
Score = 26.6 bits (56), Expect = 2.7
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +2
Query: 110 SGVPSDGNSDHVVIANPDPFFSQPSNGPSGNY 205
SG P+ +H V FF+ SN SGNY
Sbjct: 12 SGSPAPPYKNHTVAGADGWFFNATSNTTSGNY 43
>09_02_0511 -
10079180-10079355,10079656-10079722,10080144-10080181,
10080255-10080336
Length = 120
Score = 26.6 bits (56), Expect = 2.7
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +2
Query: 98 VVDNSGVPSDGNSDHVVIANPDPFFSQPSNG 190
+++N+G S GN ++ N PFF SNG
Sbjct: 57 ILNNAGATSKGNYALILPVNEFPFFLVYSNG 87
>03_02_0260 -
6924532-6924757,6925443-6925546,6925729-6926007,
6926093-6926368,6926460-6926678,6926758-6926926,
6927208-6927382,6927489-6927600,6929566-6929820
Length = 604
Score = 26.6 bits (56), Expect = 2.7
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 98 VVDNSGVPSDGNSDHVVIANPDPFFSQP 181
V++N +P N HVV+ANP P P
Sbjct: 248 VLENCQLPH-ANHGHVVLANPSPILFYP 274
>03_02_0259 -
6920472-6920579,6920744-6921022,6921115-6921390,
6921473-6921691,6921795-6921963,6922248-6922422,
6922490-6922601,6923343-6923573
Length = 522
Score = 26.2 bits (55), Expect = 3.6
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 98 VVDNSGVPSDGNSDHVVIANPDPFFSQP 181
V++N +P N HV++ANP P P
Sbjct: 240 VLENCQLPHP-NHGHVILANPSPILCYP 266
>02_01_0138 +
999809-999821,1000456-1001341,1001424-1003221,
1003716-1003805,1004034-1004111,1004513-1004518,
1004849-1004958,1005174-1005369
Length = 1058
Score = 26.2 bits (55), Expect = 3.6
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = -3
Query: 133 IAVRWNTTIVHHVNSV 86
IA RW T ++HHVNS+
Sbjct: 507 IAGRWLTQMLHHVNSL 522
>01_06_0291 -
28236235-28236576,28236785-28236900,28237560-28237731,
28238916-28239044,28239165-28239320
Length = 304
Score = 26.2 bits (55), Expect = 3.6
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -3
Query: 109 IVHHVNSVCGSHGQYGEEEKHGS 41
I+ V+++C +G+Y E+ HGS
Sbjct: 6 ILTRVDAICQKYGRYDAEKLHGS 28
>01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008
Length = 580
Score = 25.8 bits (54), Expect = 4.8
Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Frame = +2
Query: 110 SGVPSD-GNSDHVVIANPDPFF-SQPSNGPSGNY 205
SG PS GN+ + ++P PF S PS+G SGNY
Sbjct: 464 SGSPSHRGNAG--MKSSPSPFAPSGPSSGGSGNY 495
>02_05_0996 -
33380363-33380597,33380767-33380851,33381206-33381557,
33381690-33382340
Length = 440
Score = 25.0 bits (52), Expect = 8.3
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Frame = -3
Query: 136 TIAVRWNTTIVHH----VNSVCGSHGQYGEEEKHGSFHCRIVSE 17
T+A+R N +HH V++ C GQY E+ H F C+ V +
Sbjct: 177 TLALRAN---LHHRGMDVDTRCVMCGQYNEDAGHLLFKCKPVKK 217
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,015,779
Number of Sequences: 37544
Number of extensions: 101636
Number of successful extensions: 286
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 286
length of database: 14,793,348
effective HSP length: 51
effective length of database: 12,878,604
effective search space used: 257572080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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