Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_A24
(216 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006674-12|AAO38617.1| 357|Caenorhabditis elegans Hypothetical... 27 1.8
AF003386-6|AAK82897.1| 527|Caenorhabditis elegans Hypothetical ... 26 3.2
AF003386-2|AAB54255.1| 527|Caenorhabditis elegans Hypothetical ... 26 4.2
U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequen... 25 5.5
AF003141-14|AAM48549.1| 362|Caenorhabditis elegans Hypothetical... 25 5.5
AF003141-13|AAK21490.1| 549|Caenorhabditis elegans Hypothetical... 25 5.5
Z83107-6|CAD92391.1| 877|Caenorhabditis elegans Hypothetical pr... 25 7.3
Z83107-4|CAB05498.1| 878|Caenorhabditis elegans Hypothetical pr... 25 7.3
AY494975-1|AAR87492.1| 486|Caenorhabditis elegans collagen/olfa... 25 7.3
AF000262-4|AAN60526.2| 486|Caenorhabditis elegans Colmedin (col... 25 7.3
U41535-3|AAB63403.2| 266|Caenorhabditis elegans Hypothetical pr... 25 9.7
AC006768-5|AAO25977.1| 634|Caenorhabditis elegans Hypothetical ... 25 9.7
AC006768-4|AAF60575.1| 729|Caenorhabditis elegans Hypothetical ... 25 9.7
>AC006674-12|AAO38617.1| 357|Caenorhabditis elegans Hypothetical
protein K12H6.6b protein.
Length = 357
Score = 27.1 bits (57), Expect = 1.8
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = -2
Query: 134 YCRPMEHHYCPPRELCLRQPWP 69
+C P+++ Y P + L PWP
Sbjct: 282 HCSPLQYPYSNPYSILLDAPWP 303
>AF003386-6|AAK82897.1| 527|Caenorhabditis elegans Hypothetical
protein F59E12.4a protein.
Length = 527
Score = 26.2 bits (55), Expect = 3.2
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = +2
Query: 128 GNSDHVVIANPDPFFSQPSNGPSG 199
GN D VI N DPF S G G
Sbjct: 476 GNDDIPVIPNGDPFSGSSSGGSGG 499
>AF003386-2|AAB54255.1| 527|Caenorhabditis elegans Hypothetical
protein F59E12.5a protein.
Length = 527
Score = 25.8 bits (54), Expect = 4.2
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = +2
Query: 128 GNSDHVVIANPDPFFSQPSNGPSG 199
GN D VI N DPF S G G
Sbjct: 476 GNDDIPVIPNGDPFSGSSSGGSRG 499
>U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequence
x-hybridizingprotein 1 protein.
Length = 589
Score = 25.4 bits (53), Expect = 5.5
Identities = 14/36 (38%), Positives = 16/36 (44%)
Frame = +2
Query: 104 DNSGVPSDGNSDHVVIANPDPFFSQPSNGPSGNYEP 211
D SG P G DP +QPS GP G + P
Sbjct: 291 DPSGAPPSGGPPGPF----DPSGAQPSGGPPGPFNP 322
>AF003141-14|AAM48549.1| 362|Caenorhabditis elegans Hypothetical
protein W02D3.11b protein.
Length = 362
Score = 25.4 bits (53), Expect = 5.5
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = +2
Query: 158 PDPFFSQPSNGPSGNYEP 211
P PF S P P G Y+P
Sbjct: 219 PPPFASAPQTAPRGAYDP 236
>AF003141-13|AAK21490.1| 549|Caenorhabditis elegans Hypothetical
protein W02D3.11a protein.
Length = 549
Score = 25.4 bits (53), Expect = 5.5
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = +2
Query: 158 PDPFFSQPSNGPSGNYEP 211
P PF S P P G Y+P
Sbjct: 219 PPPFASAPQTAPRGAYDP 236
>Z83107-6|CAD92391.1| 877|Caenorhabditis elegans Hypothetical
protein F32A7.5c protein.
Length = 877
Score = 25.0 bits (52), Expect = 7.3
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = +2
Query: 134 SDHVVIANPDP 166
SDH++IA PDP
Sbjct: 519 SDHIIIATPDP 529
>Z83107-4|CAB05498.1| 878|Caenorhabditis elegans Hypothetical
protein F32A7.5a protein.
Length = 878
Score = 25.0 bits (52), Expect = 7.3
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = +2
Query: 134 SDHVVIANPDP 166
SDH++IA PDP
Sbjct: 519 SDHIIIATPDP 529
>AY494975-1|AAR87492.1| 486|Caenorhabditis elegans
collagen/olfactomedin domain containingprotein 2
protein.
Length = 486
Score = 25.0 bits (52), Expect = 7.3
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = -2
Query: 146 QRGHYCRPMEHHYCPPRELCLRQPWP 69
+R C +E+ CP RE PWP
Sbjct: 151 EREFKCPTIENLECPNREAIPTTPWP 176
>AF000262-4|AAN60526.2| 486|Caenorhabditis elegans Colmedin
(collagen plus olfactomedin)family protein 2 protein.
Length = 486
Score = 25.0 bits (52), Expect = 7.3
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = -2
Query: 146 QRGHYCRPMEHHYCPPRELCLRQPWP 69
+R C +E+ CP RE PWP
Sbjct: 151 EREFKCPTIENLECPNREAIPTTPWP 176
>U41535-3|AAB63403.2| 266|Caenorhabditis elegans Hypothetical
protein F18A1.7 protein.
Length = 266
Score = 24.6 bits (51), Expect = 9.7
Identities = 9/19 (47%), Positives = 10/19 (52%), Gaps = 1/19 (5%)
Frame = -3
Query: 121 WNT-TIVHHVNSVCGSHGQ 68
WN +VH VCG H Q
Sbjct: 71 WNMKNVVHQARKVCGHHAQ 89
>AC006768-5|AAO25977.1| 634|Caenorhabditis elegans Hypothetical
protein Y45G12B.1c protein.
Length = 634
Score = 24.6 bits (51), Expect = 9.7
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +2
Query: 89 RVHVVDNSGVPSDGNSDHVVIANPDPFFSQPS 184
R + V N G+ S N+D +++ +P F P+
Sbjct: 386 RSNYVFNDGIASVENADAILLVGTNPRFEAPT 417
>AC006768-4|AAF60575.1| 729|Caenorhabditis elegans Hypothetical
protein Y45G12B.1a protein.
Length = 729
Score = 24.6 bits (51), Expect = 9.7
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +2
Query: 89 RVHVVDNSGVPSDGNSDHVVIANPDPFFSQPS 184
R + V N G+ S N+D +++ +P F P+
Sbjct: 386 RSNYVFNDGIASVENADAILLVGTNPRFEAPT 417
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,935,572
Number of Sequences: 27780
Number of extensions: 83213
Number of successful extensions: 267
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 266
length of database: 12,740,198
effective HSP length: 51
effective length of database: 11,323,418
effective search space used: 226468360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -