Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_A23
         (322 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1840.06 |atp5||F0-ATPase delta subunit|Schizosaccharomyces p...    34   0.005
SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyce...    25   3.8  
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb...    24   5.0  
SPBC2G2.15c |||mitochondrial 2' O-ribose methyltransferase Mrm2 ...    24   5.0  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    23   8.7  
SPCC1442.02 ||SPCC1450.18|DUF1760 family protein|Schizosaccharom...    23   8.7  
SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr 1|||M...    23   8.7  

>SPCC1840.06 |atp5||F0-ATPase delta subunit|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 216

 Score = 34.3 bits (75), Expect = 0.005
 Identities = 16/25 (64%), Positives = 19/25 (76%)
 Frame = +2

Query: 224 GLEGRYASALYSAAHKNKALDIVEK 298
           GL+G YAS+LY+AA K   LD VEK
Sbjct: 38  GLDGSYASSLYTAAVKESKLDNVEK 62


>SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 469

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +3

Query: 72  FHYQEYNFLLEFIQRVERNHYVSRERKFTGSIVEYI 179
           + ++E+NFL   + R     YVSR     G  V YI
Sbjct: 21  YSHEEFNFLQSSLTRKLGPEYVSRRSGPGGFSVSYI 56


>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1389

 Score = 24.2 bits (50), Expect = 5.0
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -2

Query: 270  LWAAEYRADAYLPSNPXDLY 211
            +W+A Y    YL  NP D +
Sbjct: 1059 IWSATYAIKRYLGENPTDTF 1078


>SPBC2G2.15c |||mitochondrial 2' O-ribose methyltransferase Mrm2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 218

 Score = 24.2 bits (50), Expect = 5.0
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 285 SNALFLWAAEYRADAYLPSNPXDLYRS 205
           S  LF WAA+   D Y   +  D +RS
Sbjct: 4   SKTLFSWAAKRSKDFYRKKSKIDNFRS 30


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +2

Query: 32   YGSPGLQESDEGEVSLPGIQFSFR 103
            +G P L+   +  +SLPGI   F+
Sbjct: 1203 FGDPVLRTLPDSVISLPGISHKFQ 1226


>SPCC1442.02 ||SPCC1450.18|DUF1760 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 562

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +3

Query: 36  DPPGCRNRTRAKFHYQEYNFLLEFIQ 113
           D  GC      K  YQ  NF L+F++
Sbjct: 318 DTKGCLALLTIKSFYQSGNFFLDFLK 343


>SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 407

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 9/33 (27%), Positives = 21/33 (63%)
 Frame = +3

Query: 105 FIQRVERNHYVSRERKFTGSIVEYICRNSSADQ 203
           ++  ++++ Y+S E++    I E++ +NS  DQ
Sbjct: 245 YLVNMDQDDYLSDEQEALKGIKEWVEKNSFGDQ 277


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,229,236
Number of Sequences: 5004
Number of extensions: 21112
Number of successful extensions: 56
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 88030718
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)