Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_A23
         (322 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0009 + 12247232-12247380,12249821-12249854,12250861-122510...    28   1.9  
12_01_0505 - 4005211-4005234,4005235-4005432,4005522-4006006,400...    27   4.3  
03_05_0928 + 28888405-28889121                                         26   5.7  
03_01_0329 + 2558726-2559112,2559214-2559449,2559537-2559663,256...    26   5.7  
12_02_0288 + 16856922-16858046                                         26   7.6  
01_06_0971 - 33483015-33483071,33483282-33483315,33483590-334836...    26   7.6  

>12_02_0009 +
           12247232-12247380,12249821-12249854,12250861-12251007,
           12251095-12251304,12251452-12251787
          Length = 291

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -3

Query: 302 NLFLQYPMLYFYGLLSTERTHICLLIRK 219
           +L+    ++YFY LL+T R   CL+I K
Sbjct: 29  HLYSNISLVYFYCLLATPRRSRCLVISK 56


>12_01_0505 -
           4005211-4005234,4005235-4005432,4005522-4006006,
           4006533-4006700,4007128-4007203,4007327-4007409,
           4007511-4007589,4007685-4007753,4008174-4008266,
           4008668-4008713,4009398-4009522
          Length = 481

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 16/60 (26%), Positives = 29/60 (48%)
 Frame = -2

Query: 300 SFSTISNALFLWAAEYRADAYLPSNPXDLYRSLDQLSCCGRCTQRSNQ*ISFHERHNDSF 121
           ++ST S+   LW  +   D  LP N  ++  ++DQ+      T  + Q  +F   +N S+
Sbjct: 328 TYSTRSS--LLWEMKREIDGLLPPNAKNIQSAIDQILMNRDWTLLAKQEAAFSPTYNRSY 385


>03_05_0928 + 28888405-28889121
          Length = 238

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +3

Query: 15  GGGV*TMDPPGCRNRTRAKFHYQEYNFLLEFIQRV 119
           GGGV      G R RTR KF  ++   +L F +R+
Sbjct: 107 GGGVDGGGGSGGRRRTRTKFTEEQKARMLRFAERL 141


>03_01_0329 +
          2558726-2559112,2559214-2559449,2559537-2559663,
          2560190-2560326,2560467-2560626,2560828-2561106,
          2561750-2561920,2562636-2562717,2563397-2563623,
          2563682-2563727,2564199-2564281,2564376-2564492,
          2564965-2565036
          Length = 707

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -3

Query: 71 LRPRPIPAARGIHSLDAATA 12
          L PRP+PA+R + SL A +A
Sbjct: 9  LSPRPLPASRRVPSLPALSA 28


>12_02_0288 + 16856922-16858046
          Length = 374

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 216 LYRSLDQLSCCGRCTQRSNQ*ISFHERH 133
           L ++ D  S  GR  QR N  + FH+RH
Sbjct: 40  LSKASDDYSLYGRKIQRRNYMLVFHKRH 67


>01_06_0971 -
          33483015-33483071,33483282-33483315,33483590-33483684,
          33483769-33483843,33483925-33484010,33484256-33484307,
          33484381-33484455,33484554-33484620,33485699-33486159
          Length = 333

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 80 VMKLRPRPIPAARGIHSLDAATAVSS 3
          +++  P PIP  R + SLDA  A SS
Sbjct: 10 LLRRSPTPIPNPRSLLSLDAFLAASS 35


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,355,789
Number of Sequences: 37544
Number of extensions: 141589
Number of successful extensions: 413
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 413
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 411066120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)