Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_A23
         (322 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80441-5|AAB37654.1|  207|Caenorhabditis elegans Atp synthase su...    38   0.001
U80441-4|AAR25649.1|  228|Caenorhabditis elegans Atp synthase su...    38   0.001
U58739-1|AAB00607.1|  392|Caenorhabditis elegans Hypothetical pr...    31   0.24 
Z70756-3|CAC42337.1| 2514|Caenorhabditis elegans Hypothetical pr...    27   4.0  
Z70756-2|CAA94790.2| 2531|Caenorhabditis elegans Hypothetical pr...    27   4.0  
AB018598-1|BAA33886.1| 2514|Caenorhabditis elegans ATM-like prot...    27   4.0  

>U80441-5|AAB37654.1|  207|Caenorhabditis elegans Atp synthase
           subunit protein 3,isoform a protein.
          Length = 207

 Score = 38.3 bits (85), Expect = 0.001
 Identities = 16/26 (61%), Positives = 19/26 (73%)
 Frame = +2

Query: 224 GLEGRYASALYSAAHKNKALDIVEKD 301
           G+EGRYA+ALYSA HK   LD +  D
Sbjct: 29  GVEGRYAAALYSAGHKQNKLDQISTD 54


>U80441-4|AAR25649.1|  228|Caenorhabditis elegans Atp synthase
           subunit protein 3,isoform b protein.
          Length = 228

 Score = 38.3 bits (85), Expect = 0.001
 Identities = 16/26 (61%), Positives = 19/26 (73%)
 Frame = +2

Query: 224 GLEGRYASALYSAAHKNKALDIVEKD 301
           G+EGRYA+ALYSA HK   LD +  D
Sbjct: 50  GVEGRYAAALYSAGHKQNKLDQISTD 75


>U58739-1|AAB00607.1|  392|Caenorhabditis elegans Hypothetical
           protein F28C10.3 protein.
          Length = 392

 Score = 30.7 bits (66), Expect = 0.24
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -3

Query: 305 VNLFLQYPMLYFYGLLSTERTHIC 234
           +N FL Y + +F GL+ T RTH C
Sbjct: 321 LNAFLYYTLSHFTGLILTSRTHPC 344


>Z70756-3|CAC42337.1| 2514|Caenorhabditis elegans Hypothetical protein
            T06E4.3b protein.
          Length = 2514

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = +3

Query: 150  KFTGSIVEYICRNSSADQGSCTSLXD*KADMRPLCTQQ 263
            K T S++++IC+  SA   S +S+    +D+R +  Q+
Sbjct: 891  KLTLSVIDFICQEMSAASVSMSSISPNPSDIRIVMIQR 928


>Z70756-2|CAA94790.2| 2531|Caenorhabditis elegans Hypothetical protein
            T06E4.3a protein.
          Length = 2531

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = +3

Query: 150  KFTGSIVEYICRNSSADQGSCTSLXD*KADMRPLCTQQ 263
            K T S++++IC+  SA   S +S+    +D+R +  Q+
Sbjct: 891  KLTLSVIDFICQEMSAASVSMSSISPNPSDIRIVMIQR 928


>AB018598-1|BAA33886.1| 2514|Caenorhabditis elegans ATM-like protein
            protein.
          Length = 2514

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = +3

Query: 150  KFTGSIVEYICRNSSADQGSCTSLXD*KADMRPLCTQQ 263
            K T S++++IC+  SA   S +S+    +D+R +  Q+
Sbjct: 891  KLTLSVIDFICQEMSAASVSMSSISPNPSDIRIVMIQR 928


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,874,527
Number of Sequences: 27780
Number of extensions: 118697
Number of successful extensions: 276
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 276
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 376873630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)