Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_A18
         (504 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0520 + 3761990-3762327,3763304-3763589,3763746-3763820,376...    27   6.5  
01_06_0785 - 31985455-31988463                                         27   8.6  

>06_01_0520 +
           3761990-3762327,3763304-3763589,3763746-3763820,
           3764013-3764961,3766967-3767064,3768144-3768284,
           3768758-3768874,3768924-3769013,3769014-3771818
          Length = 1632

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
 Frame = +3

Query: 6   FITSYWLKVFYDHPGWNEVINDIKLIINKKSEL-------SKVL*KYWNKFVHFQMFFSP 164
           FI + W+K  +    +  V+N + L  +K+ EL       S+V+  Y     H    FSP
Sbjct: 216 FIFTLWMKFRFSSEEFGSVLNLVHLFASKRIELQPYQKPKSRVIYDYKISLAHLGREFSP 275

Query: 165 KVL*YTF 185
           +    TF
Sbjct: 276 RTHNKTF 282


>01_06_0785 - 31985455-31988463
          Length = 1002

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
 Frame = -1

Query: 195 INKKTYTIILLEKKTFEN---VQICSNIFIKLSIIQIF 91
           +N  TY +++L +K+F N   ++   N F K ++I IF
Sbjct: 223 MNASTYGVVILTRKSFGNPYTIEELRNFFGKKNLIPIF 260


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,522,224
Number of Sequences: 37544
Number of extensions: 208674
Number of successful extensions: 413
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 413
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)