Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_A18
         (504 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132859-4|CAB60492.1|  365|Caenorhabditis elegans Hypothetical ...    29   1.4  
U39999-1|AAK93855.1|  277|Caenorhabditis elegans Hypothetical pr...    28   4.4  
AL021503-1|CAA16420.2|  309|Caenorhabditis elegans Hypothetical ...    27   7.7  

>AL132859-4|CAB60492.1|  365|Caenorhabditis elegans Hypothetical
           protein Y39C12A.8 protein.
          Length = 365

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = -1

Query: 447 DKFEE*VFQKYSANAYRCN*ITIKRERDNYSSGLLYLCKIDDISTSNSPF 298
           D +E+ V++ Y +   +      +R  + Y+ G  Y    +  STSN PF
Sbjct: 191 DDYEDFVYRNYQSYQQQQQNQYARRRHEEYTDGFKYSSSSNPHSTSNEPF 240


>U39999-1|AAK93855.1|  277|Caenorhabditis elegans Hypothetical
           protein F41G3.14 protein.
          Length = 277

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 12/46 (26%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
 Frame = -1

Query: 258 NYKTIKTLDVS---LCFNFCVFIRINKKTYTIILLEKKTFENVQIC 130
           +Y+T+  L +    +C +F +F+ +N    + +LL   T E + +C
Sbjct: 181 DYRTMHRLTLEEPLMCCSFGIFVDVNSDKKSEVLLLSPTLEAISVC 226


>AL021503-1|CAA16420.2|  309|Caenorhabditis elegans Hypothetical
           protein Y68A4A.2 protein.
          Length = 309

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 231 VSLCFNFCVFIRINKKTYTIILL 163
           VS CFNF + + IN     I+L+
Sbjct: 80  VSACFNFILVVNINSSQINIVLI 102


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,394,213
Number of Sequences: 27780
Number of extensions: 236833
Number of successful extensions: 601
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 967231538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)