Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_A18
         (504 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    23   1.8  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    22   4.2  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    22   4.2  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     22   4.2  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   5.5  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   7.3  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   7.3  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   7.3  

>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 127 QYFHKTFDNSDFLLIINFISL 65
           +YF K F ++ F+LI  FI L
Sbjct: 5   KYFGKNFPSTSFILINYFIFL 25


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -3

Query: 136 NLFQYFHKTFDNSDFLLIINF 74
           N+F +  +T DN     I+NF
Sbjct: 488 NVFAFSRETEDNGSLYAILNF 508


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -3

Query: 136 NLFQYFHKTFDNSDFLLIINF 74
           N+F +  +T DN     I+NF
Sbjct: 488 NVFAFSRETEDNGSLYAILNF 508


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 205 FHSNK*KNVYYNTFGEKN 152
           FH++K  NV Y  FG+ N
Sbjct: 213 FHNDKYSNVPYFLFGDFN 230


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 10/25 (40%), Positives = 11/25 (44%)
 Frame = -3

Query: 349 LIISMQNRRHQHFEFPFYFLQTWLD 275
           L IS  +     F   FYF Q W D
Sbjct: 45  LSISSLSEVKMDFTLDFYFRQFWTD 69



 Score = 21.0 bits (42), Expect = 7.3
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = -2

Query: 74  YIVNNFIPSGMVV 36
           Y++  +IPSG++V
Sbjct: 223 YLIQIYIPSGLIV 235


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = -2

Query: 74  YIVNNFIPSGMVV 36
           Y++  +IPSG++V
Sbjct: 223 YLIQIYIPSGLIV 235



 Score = 20.6 bits (41), Expect = 9.6
 Identities = 10/25 (40%), Positives = 11/25 (44%)
 Frame = -3

Query: 349 LIISMQNRRHQHFEFPFYFLQTWLD 275
           L IS  +     F   FYF Q W D
Sbjct: 45  LSISSVSEVLMDFTLDFYFRQFWTD 69


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = +2

Query: 257  LNKIIRIEPRLKEVKGEFEVLMSSI--LHRYNK 349
            +N  +R  PRLKE+ G   ++   +  + R NK
Sbjct: 1287 MNGKLRQSPRLKELVGATSIIKDCVEDMKRGNK 1319


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = -2

Query: 74  YIVNNFIPSGMVV 36
           Y++  +IPSG++V
Sbjct: 162 YLIQIYIPSGLIV 174


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,279
Number of Sequences: 438
Number of extensions: 2999
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13864083
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)