Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_A17
         (312 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0269 + 7001891-7002212,7003598-7004037                           28   1.3  
11_04_0321 - 16359390-16359539,16359674-16359746,16360448-163608...    27   2.3  
02_05_0005 - 24890239-24891419,24891524-24891694,24891810-24892704     27   2.3  
02_02_0099 + 6768115-6768285,6769950-6770034,6770501-6770628,677...    25   9.5  

>03_02_0269 + 7001891-7002212,7003598-7004037
          Length = 253

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 126 SHHGREGCRIAWVDNWDD*NRR 61
           + H R+  R+AW D W D +R+
Sbjct: 62  TEHARQRMRVAWADGWVDGSRK 83


>11_04_0321 -
           16359390-16359539,16359674-16359746,16360448-16360845,
           16360919-16362673,16362751-16362861,16363745-16363962,
           16364088-16364196
          Length = 937

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +3

Query: 84  YPPKRYDNPLARGGK 128
           YPPKRY NP+   G+
Sbjct: 859 YPPKRYSNPVGPAGR 873


>02_05_0005 - 24890239-24891419,24891524-24891694,24891810-24892704
          Length = 748

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -2

Query: 122 TTGERVVVSLGWIIGMIEIDERRSSASGFIISAR 21
           +TG +V + L W++G     E R +A+G++  +R
Sbjct: 233 STGGKVPLVLDWVVGKKTCREARRNATGYMCVSR 266


>02_02_0099 + 6768115-6768285,6769950-6770034,6770501-6770628,
            6771429-6771465,6773108-6774193,6774337-6774447,
            6774701-6774817,6774818-6775120,6776092-6776513,
            6776645-6777274
          Length = 1029

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = -1

Query: 165  PSFKIAYLYETFTSHHGREGCRIAWVDNWDD 73
            P+  + YL    +  HGR+G  I+++ + D+
Sbjct: 974  PTQPVCYLRHVQSGQHGRKGVAISFITSTDE 1004


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,427,061
Number of Sequences: 37544
Number of extensions: 97959
Number of successful extensions: 228
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 228
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 388087168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)